Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1217 ATGTTGGTGGGAGATGGTATTGGGAAGACTATAATCACCGGTAGCAAAAGTGTTGGAGGAGGCAGCACGACCTTTCGTTCAGCCACTGTTGCTGTTACAGGGGATGGGTTTATTGCTCAAGACATTACATTTAGAAACACTGCTGGAGCATCGAATCACCAAGCCGTGGCACTGCGTTCTGGGTCAGATTTGTCAGTATTTTACAGATGCAGCTTTGAAGGTTACCAAGACACATTGTATGTACACTCTCAGAGACAGTTCTACAAGGAATGTGACATTTATGGCACGGTAGACTTTATCTTTGGCAACGCTGCAGTTGTTTTCCAAAACTGCAACCTTTTTGCAAGAAACTCTCCTAACAAAGTCAACACAATCACAGCCCAAGGTCGAACTGATCCAAATCAAAACACTGGTATCTCCATTCACAATTCTAGAGTTACAGCTGCCTCTGATCTTAAACCAGTCCAAAGCTCTGTGAAGACCTATCTTGGAAGGCCGTGGCAACAATATTCCCGTACAGTATTTATGAAGACATTTCTGGATAGTTTGATCAACCAGGCTGGTTGGTTGGAATGGAGTGGTAACTTCGCCTTAAACACTTTGTATTATGGAGAGTATTTGAATACTGGTCCAGGTTCTTCAACAGCAAATCGGGTTAAGTGGTCGGGTTACCATGTTATCACCAGCGCTTTCGAAGCCTCAAAATTCACTGTTTCTAATTTCATCACCGGAAACTCATGGTTGCCAGCCACAAGGGTGCCTTTCACCTCTGGTTTATAA 780 0.4372 MLVGDGIGKTIITGSKSVGGGSTTFRSATVAVTGDGFIAQDITFRNTAGASNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRQFYKECDIYGTVDFIFGNAAVVFQNCNLFARNSPNKVNTITAQGRTDPNQNTGISIHNSRVTAASDLKPVQSSVKTYLGRPWQQYSRTVFMKTFLDSLINQAGWLEWSGNFALNTLYYGEYLNTGPGSSTANRVKWSGYHVITSAFEASKFTVSNFITGNSWLPATRVPFTSGL 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1217 259 PANTHER PECTINESTERASE 1 249 - -
Glsi07g1217 259 FunFam Pectinesterase 1 259 - -
Glsi07g1217 259 SUPERFAMILY Pectin lyase-like 1 258 IPR011050 -
Glsi07g1217 259 ProSitePatterns Pectinesterase signature 2. 93 102 IPR033131 -
Glsi07g1217 259 Pfam Pectinesterase 1 245 IPR000070 GO:0030599|GO:0042545
Glsi07g1217 259 Gene3D - 1 259 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1217 Glsi-ChrGlsi07 18599520 18600418 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1217 1 259 Carbohydrate Esterase AT2G45220 77.606 8.83e-147 419