Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1214 ATGGCAGCTTTTCGCTTACTCATAGCACTCTTACTTGTTCCCTTCTTATATTCCTCTCTTGCTTCTGGTTATTCTTGGAATGACGTTAAAGTTTGGTGCAGCCAAACTCCTAACCCTCAACCATGTGAGTATTTCTTGAGCAACAATCCGACTCACAACCACAAACCCATCAAACACAAAGATGATTTCCTCAAGCTTTCACTCCAACTCGCCCAAGAGCGAGCATTGATCGGCCATGCAAACACTCTATCACTTGGCCCAAACTGTCGCAGCCCTCGTGAAAAAGCTGCTTGGGCTGATTGCCTTGAGCTCTATGAGCACACCATTCACAGACTCAACAAAACCTTAGACCCCAACACCAAGTGCTCCCAGACTGATGCTCAAACATGGCTCAGCACAGCTCTCACCAACCTTGAGACGTGCCAAGCTGGGTTTTATGAGCTCGGGGTAGGAGACTATGTGTTGCCCCTGATGTCCAACAATGTTACCAAGTTGCTAAGCAACACTTTGGCTCTAAACAAGGTTGAATATCAAGAACCAAGTTATAAAGATGGGTTCCCAACATGGGTTAAGCCCGGTGATAGGAAGTTGTTGCAGGCGTCTTCTCCAGCTTCTCGCGCTAACGTTGTGGTGGCTAAAGATGGGTCCGGCAAGTACACAACTTTGAGTGCTGCCGTAAATGCTGCACCAAAGAGTAGTAGTGGGAGGTACGTGATATACGTGAAGGCAGGAATTTACAATGAACAGGTTGAGATAAAGGCAAAGAATATCATGTTGCTGGGAGATGGTATTGGGAAGACTATAATCACAGGTAGCAAAAGTGTTGGAGGAGGCACCACAACCTTCCGGTCGGCGACTGTTGCTGTAACAGGGGATGGATTTATTGCTCAAGACATTACATTTAGAAACACTGCTGGAGCATCGAATCACCAAGCCGTGGCACTGCGTTCTGGGTCAGATTTGTCAGTATTTTACAGATGCAGCTTTGAAGGTTACCAAGACACATTGTATGTACACTCTGAGAGACAGTTCTACAGGGAATGTGACATTTATGGCACGGTAGACTTTATCTTTGGCAACGCTGCAGTCGTTTTCCAAAACTGCAACCTTTTTGCAAGAAACCCTCCTAACAAAGTCAACGCAATCACAGCCCAAGGTCGAACTGATCCAAATCAAAACACTGGTATCTCCATTCACAATTCTAGAGTTACAGCTGCCTCTGATCTTAAACCAGTCCAAAGCTCTGTGAAGACCTATCTTGGAAGGCCATGGCAACAATATTCCCGAACAGTATTTATGAAGACATTTCTTGATAGTTTGATCAACCAGGCTGGTTGGTTGGAATGGAGCGGTAACTTCGCCTTAAACACTTTGTATTATGGAGAGTATATGAATACTGGTCCAGGTGCTTCAACAGAAAATCGGGTTAAGTGGTCAGGTTACCATGTTATCACCAGTGCTTCCGAAGCCTCAAAATTCACTGTTTCTAATTTCATCACCGGAAACTCATGGTTGCCAGCCACAAGGGTGCCTTTCACCTCTGGAGTCTTCAGGTCAAGTCAAGAGACATTGGCCAAAATAGAAAAAGTCAAGTCAAGGGAGGTGCATAATGAAGCTGAAAGACATGGATTCTATACTATCAAGATTTTACCATAA 1656 0.4493 MAAFRLLIALLLVPFLYSSLASGYSWNDVKVWCSQTPNPQPCEYFLSNNPTHNHKPIKHKDDFLKLSLQLAQERALIGHANTLSLGPNCRSPREKAAWADCLELYEHTIHRLNKTLDPNTKCSQTDAQTWLSTALTNLETCQAGFYELGVGDYVLPLMSNNVTKLLSNTLALNKVEYQEPSYKDGFPTWVKPGDRKLLQASSPASRANVVVAKDGSGKYTTLSAAVNAAPKSSSGRYVIYVKAGIYNEQVEIKAKNIMLLGDGIGKTIITGSKSVGGGTTTFRSATVAVTGDGFIAQDITFRNTAGASNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSERQFYRECDIYGTVDFIFGNAAVVFQNCNLFARNPPNKVNAITAQGRTDPNQNTGISIHNSRVTAASDLKPVQSSVKTYLGRPWQQYSRTVFMKTFLDSLINQAGWLEWSGNFALNTLYYGEYMNTGPGASTENRVKWSGYHVITSASEASKFTVSNFITGNSWLPATRVPFTSGVFRSSQETLAKIEKVKSREVHNEAERHGFYTIKILP 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1214 551 ProSitePatterns Pectinesterase signature 1. 233 252 IPR018040 -
Glsi07g1214 551 FunFam Pectinesterase 24 175 - -
Glsi07g1214 551 SMART PMEI_2 24 172 IPR006501 GO:0004857
Glsi07g1214 551 SUPERFAMILY Pectin lyase-like 202 515 IPR011050 -
Glsi07g1214 551 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 175 IPR035513 -
Glsi07g1214 551 FunFam Pectinesterase 202 516 - -
Glsi07g1214 551 CDD PMEI-like_3 32 174 - -
Glsi07g1214 551 ProSitePatterns Pectinesterase signature 2. 350 359 IPR033131 -
Glsi07g1214 551 Gene3D - 203 516 IPR012334 -
Glsi07g1214 551 Pfam Pectinesterase 208 502 IPR000070 GO:0030599|GO:0042545
Glsi07g1214 551 Pfam Plant invertase/pectin methylesterase inhibitor 29 172 IPR006501 GO:0004857
Glsi07g1214 551 SMART complete 241 419 IPR006633 -
Glsi07g1214 551 PANTHER PECTINESTERASE 11 508 - -
Glsi07g1214 551 NCBIfam pectinesterase inhibitor domain 7 174 IPR006501 GO:0004857
Glsi07g1214 551 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 175 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1214 Glsi-ChrGlsi07 18521590 18523915 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1214 1 516 Carbohydrate Esterase AT2G45220 68.726 0.0 748