Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1213 ATGACCTTCCAAAACACAGCGGGTCCCTCGAAGCACTGCCCTGCGAGTCGGGTCGGACCTCGCGGCCTTCTTCAACTGCGACTTTCTAGCATACCAAGACACCCTCTACGTCCACCACAAGTTATAATGATGGCTTCCCAACATGGATGGTTCCGGCAAGTACACAACTTTGAGTGCTGCCGTAATGCTGCCCCAAAGAGTAGTAGTGGGAGGTACGTCATATACGTGAAGGCAGGGATTTACAATGAACAGGTTGAGATAAAGGCAAAGAATATCATGTTGGTGGGAGATGGAATTGGGAAGACTATAATCACAGGTAGCAAAAGTGTTGGAGGAGGCACCACGACCTTTCGTTCAGCCACTGTTGCTGTTACAGGGGATGGGTTTATTGCTCAAGACATTACATTTAGAAACACTGCTGGAGCATCGAATCACCAAGCCGTGGCTCTGCGTTCTGGGTCAGATTTGTCAGTATTTTACAGATGCAGCTTTGAAGGTTACCAAGACACATTGTATGTACACTCTGAGAGACAGTTCTACAGGGAATGTGACATTTATGGCACGGTAGACTTTATCTTTGGCAACGCTGCAGTGGTTTTCCAAAACTGTAACCTTTTTGCTAGAAATCCCCCTAACAAAGTCAACACAATCACAGCCCAAGGTCGAACTGATCCAAATCAAAACACTGGTATTTCCATCCACAATTCTAGAGTTACAGCTGCCTCTGATCTTAAACCAGTCCAAAGCTCTGTGAAGACCTATCTTGGAAGGCCATGGCAACAATATTCCCGAACAATATTTATGAAGACATTTCTTGATAGTTTGATCAACCAGGCTGGTTGGTTGGAATGGAGTGGTAACTTCGCCTTAAACACTTTGTATTATGGAGAGTAG 894 0.4541 MTFQNTAGPSKHCPASRVGPRGLLQLRLSSIPRHPLRPPQVIMMASQHGWFRQVHNFECCRNAAPKSSSGRYVIYVKAGIYNEQVEIKAKNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVAVTGDGFIAQDITFRNTAGASNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSERQFYRECDIYGTVDFIFGNAAVVFQNCNLFARNPPNKVNTITAQGRTDPNQNTGISIHNSRVTAASDLKPVQSSVKTYLGRPWQQYSRTIFMKTFLDSLINQAGWLEWSGNFALNTLYYGE 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1213 297 PANTHER PECTINESTERASE 40 297 - -
Glsi07g1213 297 SUPERFAMILY Pectin lyase-like 62 297 IPR011050 -
Glsi07g1213 297 ProSitePatterns Pectinesterase signature 1. 68 87 IPR018040 -
Glsi07g1213 297 SMART complete 76 254 IPR006633 -
Glsi07g1213 297 Pfam Pectinesterase 61 297 IPR000070 GO:0030599|GO:0042545
Glsi07g1213 297 FunFam Pectinesterase 4 40 297 - -
Glsi07g1213 297 Gene3D - 40 297 IPR012334 -
Glsi07g1213 297 ProSitePatterns Pectinesterase signature 2. 185 194 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1213 Glsi-ChrGlsi07 18517895 18518982 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1213 56 297 Carbohydrate Esterase AT2G45220 77.778 8.92e-137 395