Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1210 ATGGCAGTATTTCGCTTACTCATAGCACTCTTACTTGTTCCCCTCTTATATTCCTCTCTTGCTTCTGGCTATTCTTGGAATGATGTTAAAGTTTGGTGCAGCAAAACTCCTAACCCTCAACCATGTGAGTATTTCTTGAGCAACAATCCGACTCACGACCACAAACCCATCAAACACAAAGATGATTTCCTCAAGCTTTCACTCCAACTCGCCCAAGAGCGAGCAGTGATCGGCCATGCAAACACTCTATCACTTGGCCCAAAGTGTCGCAGCCCTCGTGAAAAGGCTGCTTGGGCTGATTGCCTTGAGCTCTATGAGCACACCATTCACAGACTCAACAAAACCTTAGACCCCAACATCAAGTGCTCTCAGACTGATGCTCAAACATGGCTCAGCACAGCTCTCACCAACCTTGAGACGTGCCAAGCTGGGTTTTATGAGCTCGGGGTAGGAGACTATGTGTTGCCCCTGATGTCCAACAATGTTACCAAGTTGCTAAGCAACACTTTGGCTCTAAACAAGGTTGAATATCAAGAATCAAGTTATAAAGATGGGTTCCCAACTTGGGTTAAGCCCGGTGATAGGAAGTTGTTGCAGGCGTCTTCTCCAGCTTCTCGCGCAAACGTTGTGGTGGCTAAAGATGGGTCCGGCAAGTACACAACTTTGAGTGCTGCCGTAAATGCTGCACCAAAGAGTAGTAGCGGGAGGTACGTGATATACGTGAAGGCAGGAATTTACAATGAACAGGTTGAGATAAAGGCAAAGAATATCATGTTGGTGGGAGATGGTATTGCGAAGACTATAATCACCGGTAGCAAAAGTGTTGGAGGAGGCACCACGACCTTTCGTTCAGCCACTGTTGCTGTTACAGGGGATGGGTTTATTGCTCAAGACATTACATTTAGAAACACTGCTGGAGCATCGAATCACCAAGCCGTGGCACTGCGTTCTGGGTCAGATTTGTCAGTATTTTACAGATGCAGCTTTGAAGGTTACCAAGACACATTGTATGTACACTCTGAGAGGCAGTTCTACAGGGAATGTGACATTTATGGCACGGTAGACTTTATCTTTGGCAACGCTGCAGTTGTTTTCCAAAACTGCAACCTTTTTGCAAGAAACCCTCCTAACAAAGTCAACACAATCACAGCCCAAGGTCGAACTGATCCAAATCAAAACACTGGTATCTCCATTCACAATTCTAGAGTTACAGCTGCCTCTGATCTTAAACCAGTCCAAAGCTCTGTGAAGACCTATCTTGGAAGGCCGTGGCAACAATATTCCCGAACAGTATTTATGAAGACATTTCTGGATAGTTTGATCAACCAGGCTGGTTGGTTGGAATGGAGTGGTAACTTTGCCTTAAACACTTTGTATTATGGAGAGTATATGAATACTGGTCCAGGTTCTTCAACAGCAAATCGGGTTAAGTGGTCGGGTTACCATGTTATCACAAGCGCTTCCGAAGCCTCAAAATTCACTGTTTCTAATTTCATCACCGGAAACTCATGGTTGCCAGCCACAAGGGTGCCTTTCACCTCTGGTTTATAA 1551 0.4533 MAVFRLLIALLLVPLLYSSLASGYSWNDVKVWCSKTPNPQPCEYFLSNNPTHDHKPIKHKDDFLKLSLQLAQERAVIGHANTLSLGPKCRSPREKAAWADCLELYEHTIHRLNKTLDPNIKCSQTDAQTWLSTALTNLETCQAGFYELGVGDYVLPLMSNNVTKLLSNTLALNKVEYQESSYKDGFPTWVKPGDRKLLQASSPASRANVVVAKDGSGKYTTLSAAVNAAPKSSSGRYVIYVKAGIYNEQVEIKAKNIMLVGDGIAKTIITGSKSVGGGTTTFRSATVAVTGDGFIAQDITFRNTAGASNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSERQFYRECDIYGTVDFIFGNAAVVFQNCNLFARNPPNKVNTITAQGRTDPNQNTGISIHNSRVTAASDLKPVQSSVKTYLGRPWQQYSRTVFMKTFLDSLINQAGWLEWSGNFALNTLYYGEYMNTGPGSSTANRVKWSGYHVITSASEASKFTVSNFITGNSWLPATRVPFTSGL 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1210 516 ProSitePatterns Pectinesterase signature 1. 233 252 IPR018040 -
Glsi07g1210 516 SMART complete 241 419 IPR006633 -
Glsi07g1210 516 SUPERFAMILY Pectin lyase-like 202 515 IPR011050 -
Glsi07g1210 516 SMART PMEI_2 24 172 IPR006501 GO:0004857
Glsi07g1210 516 FunFam Pectinesterase 202 516 - -
Glsi07g1210 516 PANTHER PECTINESTERASE 12 506 - -
Glsi07g1210 516 NCBIfam pectinesterase inhibitor domain 7 174 IPR006501 GO:0004857
Glsi07g1210 516 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 175 IPR035513 -
Glsi07g1210 516 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 175 IPR035513 -
Glsi07g1210 516 CDD PMEI-like_3 32 174 - -
Glsi07g1210 516 Gene3D - 203 516 IPR012334 -
Glsi07g1210 516 ProSitePatterns Pectinesterase signature 2. 350 359 IPR033131 -
Glsi07g1210 516 FunFam Pectinesterase 24 175 - -
Glsi07g1210 516 Pfam Plant invertase/pectin methylesterase inhibitor 29 172 IPR006501 GO:0004857
Glsi07g1210 516 Pfam Pectinesterase 208 502 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1210 Glsi-ChrGlsi07 18482212 18483886 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1210 1 516 Carbohydrate Esterase AT2G45220 68.147 0.0 744