Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1206 ATGGCATTAAATTGTGGTGTAGCCAAACTCCTAACCCTCAACCATCGAGCATTGATCGGCGATGCAAACACTCTATCACTAGGCCCAAAGTGTCGCAATCCTCGTGAAAAGGCTGCTTGGGCTGATTGCCTTGAGCTTTATGAGCACACCATACACATACTCAACAAAACCTTAGACCAAAACACCAAGTTCTCCCAAACTGATGCTCAAACATGGCTCAGCACAGCTCTCACAAACCTTGAGACGTGCCAAGCTGGGTTTTATGAGCTTGGGGTACAATGTGTTGCCCCCGATGTCCAACAATGTTACCAAGTTGCTAAGCAACACTTTGGCTCTAAACAAGCTTCTCGCGCTAACGTTGTGGTGGCTAAAGATGGGTCTAGCAAGTTCACAACTTTGAGTGCTGCCATAAATGCTGCACCAAAGAGTGTGGGAGATGGTATTGGGAAGACTATAATCACTGGTAGCAAAAGTGTTGGAGGAGGCACCAAAACCTTCCGGTCATTCACTGTTGCTGTTGCAGGAGATGAGTTTATTGCTCAAGACATCACATTTAGAAACACTGCTGGAGCATCGAATCACCAAGCCGTGGCACTGCGTTCTGGGTTAGATTTGTCAGTATTTTACAGATGCAGCTTTGAAGGTTACCAAGACACATTAAACCCTCCTAACAAAGTCAACACAATCACAGCCCAAGGTCGAACTGATCCAAATCAAAACACTGGTATCTCCATTCACAATTCTAGAGTTACAGCTGTCTCTGATCTTCAACCAGTCCAAAGCTCTGTGAAGACCTATCTTGGAAGGCCATGGCAACAATATTCGCAAACAGCATTTATGAAGACATTTCTTGACAGTTTGATCAACCAGTCTGGTTGGTTGGAATGGAGTGGTAACTTCGCCTTAAACACTTTGTATTACGGAGAGTATTTGAATACAGGACCATGCTCTTCAACAGAAAATCGGGTTAAGTGGTCAGGTTACCATGTTATCGCCAGTGCTTCCGAAGCTTCAAAATTCACTGTTTCTAATTTCATCTCCGGGAGCTCATGGTTGCCAGCCACTAGGGTGCCTTTCACCTCTGGTTTATAA 1092 0.4487 MALNCGVAKLLTLNHRALIGDANTLSLGPKCRNPREKAAWADCLELYEHTIHILNKTLDQNTKFSQTDAQTWLSTALTNLETCQAGFYELGVQCVAPDVQQCYQVAKQHFGSKQASRANVVVAKDGSSKFTTLSAAINAAPKSVGDGIGKTIITGSKSVGGGTKTFRSFTVAVAGDEFIAQDITFRNTAGASNHQAVALRSGLDLSVFYRCSFEGYQDTLNPPNKVNTITAQGRTDPNQNTGISIHNSRVTAVSDLQPVQSSVKTYLGRPWQQYSQTAFMKTFLDSLINQSGWLEWSGNFALNTLYYGEYLNTGPCSSTENRVKWSGYHVIASASEASKFTVSNFISGSSWLPATRVPFTSGL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1206 363 Pfam Plant invertase/pectin methylesterase inhibitor 23 103 IPR006501 GO:0004857
Glsi07g1206 363 Gene3D - 223 363 IPR012334 -
Glsi07g1206 363 SUPERFAMILY Pectin lyase-like 114 362 IPR011050 -
Glsi07g1206 363 Gene3D Invertase/pectin methylesterase inhibitor family protein 7 109 IPR035513 -
Glsi07g1206 363 CDD PMEI-like_3 22 87 - -
Glsi07g1206 363 PANTHER PECTINESTERASE 223 353 - -
Glsi07g1206 363 NCBIfam pectinesterase inhibitor domain 27 96 IPR006501 GO:0004857
Glsi07g1206 363 SMART PMEI_2 6 137 IPR006501 GO:0004857
Glsi07g1206 363 Pfam Pectinesterase 224 348 IPR000070 GO:0030599|GO:0042545
Glsi07g1206 363 Pfam Pectinesterase 144 220 IPR000070 GO:0030599|GO:0042545
Glsi07g1206 363 Gene3D - 116 222 IPR012334 -
Glsi07g1206 363 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 25 92 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1206 Glsi-ChrGlsi07 18405193 18410811 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1206 16 363 Carbohydrate Esterase AT2G45220 52.955 3.49e-144 416