Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1203 ATGGCAGTTTTTCGCTTACTCATAGCACTGTTACTTCCCCTCTTATATTCCTCTCTTGCTTCTGGCTATTCTTGGAATGACGTTAAAGTTTGGTGCAGCCAAACTCCTAACCCTCAACCATGTGAGTATTTCTTGAGCAACAATCCGACTCACAACCACAAACCCATCAAACACAAAGATGATTTCCTCAAGCTTTCACTCCAACTCGCCCAAGAGCGAGCATTGATCGGCCATGCAAACACTCTATCACTTGGCCCAAAGTGTCGCAACACTCGTGAAAAGGCTGCTTGGGCTGATTGCCTTGAGCTCTATGAGCACACCATTCACAGACTCAACAAAACCTTAGACCCAAACACCAAGTGCTCCCAAACTGATGCTCAAACATGGCTCAGCACAGCTCTCACCAACCTTGAGACGTGCCAAGCTGGGTTTTATGAGCTTGGGGTACAAGACTATGTGTTGCCCCTGATGTCCAACAATGTTACCAAGTTGCTAAGCAACACTTTGGCTCTAAACAAGGTCGAATATCAAGAACCAAGTTATAATGATGGGTTCCCAACATGGGTTAAGCCCGGAGATAGAAAGTTGTTGCAGGCGTCTTCTCCAGCTTCTCGCGCTAACGTTGTGGTGGCTAAAGATGGTTCCGGCAAGTACACAACTTTGAGTGCTGCCCTAAATGCTGCACCAAAGAGTAGTAGTGGGAGGTACGTAATATACGTGAAGGCAGGGATTTACAATGAACAGGTCGAGATAAAGGCAAAGAATATCATGTTGGTGGGAGATGGAATTGGGAAGACTATAATCACCGGCAGCAAAAGTGTTGGAGGAGGCACCACGACCTTTCGTTCAGCCACTGTTGCTGTTACAGGGGATGGGTTTATTGCTCAGGACATTACATTTAGAAACACTGCTGGAGCATCGAATCACCAAGCCGTGGCACTGCGTTCTGGGTCAGATTTGTCAGTATTTTACAGATGCAGCTTTGAAGGTTTCCAAGACACGTTGTATGTACACTCTGAGAGACAATTCTACAGGGAATGTGACATTTATGGCACGGTAGACTTTATCTTCGGTAACGCTGCAGTGGTTTTCCAAAACTGTAACCTTTTTGCAAGAAACCCTCCTAACAAAGTCAACACAATCACAGCCCAAGGTCGAACTGATCCAAATCAAAACACTGGTATCTCCATTCACAATTCTAGAGTTACAGCTGCCTCTGATCTTAAACCAGTCCAAAGCTCTGTGAAGACCTATCTTGGAAGGCCATGGCAACAATATTCGCGAACAGTATTTATGAAGACATTTCTTGATAGTTTGATCAACCAGGCTGGTTGGATGGAATGGAGTGGTAACTTCGCCTTAAACACTTTGTATTATGGAGAGTATATGAATACTGGTCCAGGTTCTTCAACAGCAAATCGGGTTAAGTGGTCAGGTTACCATGTTATCACCAGTGCTTCCGAAGCCTCAAAATTCACTGTTTCTAATTTCATCTCGGGGAACTCATGGTTGCCAGCCACAAGGGTGCCTTTCACCTCTGGCTTATAA 1548 0.4516 MAVFRLLIALLLPLLYSSLASGYSWNDVKVWCSQTPNPQPCEYFLSNNPTHNHKPIKHKDDFLKLSLQLAQERALIGHANTLSLGPKCRNTREKAAWADCLELYEHTIHRLNKTLDPNTKCSQTDAQTWLSTALTNLETCQAGFYELGVQDYVLPLMSNNVTKLLSNTLALNKVEYQEPSYNDGFPTWVKPGDRKLLQASSPASRANVVVAKDGSGKYTTLSAALNAAPKSSSGRYVIYVKAGIYNEQVEIKAKNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVAVTGDGFIAQDITFRNTAGASNHQAVALRSGSDLSVFYRCSFEGFQDTLYVHSERQFYRECDIYGTVDFIFGNAAVVFQNCNLFARNPPNKVNTITAQGRTDPNQNTGISIHNSRVTAASDLKPVQSSVKTYLGRPWQQYSRTVFMKTFLDSLINQAGWMEWSGNFALNTLYYGEYMNTGPGSSTANRVKWSGYHVITSASEASKFTVSNFISGNSWLPATRVPFTSGL 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1203 515 ProSitePatterns Pectinesterase signature 2. 349 358 IPR033131 -
Glsi07g1203 515 NCBIfam pectinesterase inhibitor domain 8 173 IPR006501 GO:0004857
Glsi07g1203 515 SUPERFAMILY Pectin lyase-like 201 514 IPR011050 -
Glsi07g1203 515 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 174 IPR035513 -
Glsi07g1203 515 PANTHER PECTINESTERASE 11 505 - -
Glsi07g1203 515 FunFam Pectinesterase 201 515 - -
Glsi07g1203 515 FunFam Pectinesterase 23 174 - -
Glsi07g1203 515 Gene3D - 202 515 IPR012334 -
Glsi07g1203 515 ProSitePatterns Pectinesterase signature 1. 232 251 IPR018040 -
Glsi07g1203 515 CDD PMEI-like_3 31 173 - -
Glsi07g1203 515 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 174 IPR035513 -
Glsi07g1203 515 Pfam Pectinesterase 207 501 IPR000070 GO:0030599|GO:0042545
Glsi07g1203 515 SMART PMEI_2 23 171 IPR006501 GO:0004857
Glsi07g1203 515 Pfam Plant invertase/pectin methylesterase inhibitor 28 171 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1203 Glsi-ChrGlsi07 18342094 18343766 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1203 1 515 Carbohydrate Esterase AT2G45220 68.726 0.0 749