Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1200 ATGACCACTTGGGCCACCACCACCACCTTGCTCGTCCTTCTTCTGGCTATGGCCACCACGACCACCATCTCTGTCCTCCAAGACAGGGGTGCCCTTCAGATGGCTCAAACCCAGGTTCTGCAAGCAAAGAATTGGATTGAAAACTCTTTAAGCTTTCATGGGCCAGGCGGAAATGTAGCTGTGGCTCTTAGAGATTGCGCTAAGCTTTACGGTGAGAGCGAGTTCAGGCTAGCTCGCATGGTGTTCATGAACGACACTTACACAAGAGATGATGAGCTTACGTGGATAAGCTCGGTGATGGCAAATCATAGGACGTGTTTGGATGGCTTAAAGGAAAATGGGTATGATAAAGGCCTTGCTTTGGGAACAAACTTAACCACTTTCCTCAGCAATGTTCTTACCTTGTGTGGTAAGGACCGAAAGGAGAAGGGGAAGGAGAAGGAGAAGAAACAACTACATGGAGATGACTCTATGCGAGAGCAGGGTCTTCTAGCATCATGGAACCCATCAAACTCCAAAGCAGACTTCACAGTGGCGCAAGATGGTTCAGGCACCCACAGAACAATCAGTGAAGCAGTGGATGCATTGGCTTCAATGGGTCACGACCGTCCAGTTCGGGTGGTTTTCTATGTGAAATCCGGAGTTTACAGTGAGAGAGTAGAGATTTCAAGGAAAATGTATAATGTGATGTTCGTGGGTGATGGCATCGACAAAACAGTAGTTACTGGTGATAGAGACATTTCTGGAGCTGGTTCCCTTCTAAACTCTGCTACATTTGATGTATATGGAGATGGCTTTTGGGCAAGGGACATGACATTTGAGAACACAGCAGGCCCTCAAAAGCACCAAGCTGTAGCTCTAAAGGTGAGCTCAGACAAATCCATCTTCTACAAATGCAGCTTCAAAGCCTACCAAGACACTCTCTATGTTCACTCAAACAGGCAACTCTACAGCGCGTGCCAAATCTATGGCACCGTCGATTTCATCTTCGGTGATGCTTCAGCCTCCTTCCAAGACTCTGACATCTTCGTGAGAAAACCTATGGAGAACCAGTTCACCTCCATTACTGCACATGGCAGAGAAAAACCAGACGAACCCACTGGCATAGTCATCCATGGATGCCGAGTTAGACCTGCTTCTGATCTTGCTGATGCAAAAGGGTCCTTCAAGACCTACCTAGGGAGGCCATGGAAGGAGTATTCTAGGACTGTGTTTATGAAGACGGACATTGATGGGTTCGTTGACCCTAAAGGGTGGAAGGAATGGGAAGGAAGCTATGCTCTTTCGACTCTATACTATGGAGAGTTTAAGAACACTGGGAGTGGTGGGTCTACTGAGAATAGGGTAAACTGGCCTGGTTTTCATGTGCTCAGTGAAGAGGAAGCTAGTGCTTTTACGGTGAGTCGTTTTATGGACGGAGAATCGTGGATTCCTGCATCCGGCGTGCCGTTTTGGGTTGGGATTTAA 1467 0.4758 MTTWATTTTLLVLLLAMATTTTISVLQDRGALQMAQTQVLQAKNWIENSLSFHGPGGNVAVALRDCAKLYGESEFRLARMVFMNDTYTRDDELTWISSVMANHRTCLDGLKENGYDKGLALGTNLTTFLSNVLTLCGKDRKEKGKEKEKKQLHGDDSMREQGLLASWNPSNSKADFTVAQDGSGTHRTISEAVDALASMGHDRPVRVVFYVKSGVYSERVEISRKMYNVMFVGDGIDKTVVTGDRDISGAGSLLNSATFDVYGDGFWARDMTFENTAGPQKHQAVALKVSSDKSIFYKCSFKAYQDTLYVHSNRQLYSACQIYGTVDFIFGDASASFQDSDIFVRKPMENQFTSITAHGREKPDEPTGIVIHGCRVRPASDLADAKGSFKTYLGRPWKEYSRTVFMKTDIDGFVDPKGWKEWEGSYALSTLYYGEFKNTGSGGSTENRVNWPGFHVLSEEEASAFTVSRFMDGESWIPASGVPFWVGI 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1200 488 CDD PMEI-like_4 29 135 - -
Glsi07g1200 488 SMART PMEI_2 21 135 IPR006501 GO:0004857
Glsi07g1200 488 Pfam Plant invertase/pectin methylesterase inhibitor 30 134 IPR006501 GO:0004857
Glsi07g1200 488 PANTHER PECTINESTERASE 34 478 - -
Glsi07g1200 488 SUPERFAMILY Pectin lyase-like 172 487 IPR011050 -
Glsi07g1200 488 ProSitePatterns Pectinesterase signature 2. 322 331 IPR033131 -
Glsi07g1200 488 FunFam Pectinesterase 169 488 - -
Glsi07g1200 488 Gene3D - 169 488 IPR012334 -
Glsi07g1200 488 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 133 IPR035513 -
Glsi07g1200 488 Gene3D Invertase/pectin methylesterase inhibitor family protein 21 138 IPR035513 -
Glsi07g1200 488 Pfam Pectinesterase 175 473 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1200 Glsi-ChrGlsi07 18321770 18325471 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1200 1 488 Carbohydrate Esterase AT3G60730 50.769 0.0 528