Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1162 ATGGTGATCATTCTTTCCATCACTAGTGTTGTTGTCATCCTATTTATTGGGGTATTGAGACAACGAGTTCTTAACAAAATTTATTTTGAGAAAATGCCACTAGTGAAGAATGGAGATTTGTTCTCAATATGGAACTATGATGGTAAAATTGCATTTAAAGATATTATTGAAGCAACAGAAGATTTTGATATCAAGTATTGTATTGGAACGGGTGCTTATGGTAGTGTTTACAAGGCAGTACTTCCCAGTGGCAGAATTGTTGCATTAAAGAAACTTCACAAGACAGAATCTGAAAACCGATCTTTTGAGAAGAGTTTTTGCAATGAGGTCAAGACACTAACAGAAATTCGTCATCGAAATATTGTGAAGCTCCATGGCTTTTGTTTGCACACACGATGCATGTTTTTGGTCTATGAATATATGGAAAGTGGTAGCTTGTTTTGTGTCTTAAACAATGATGCGGTAGCTCAAGAGTTGGATTGGAATAAGAGAGTGAATATCATTAAAGGGATAGCACATGCTTTGGCTTACATGCATCATGAATGTGTCCCACCAATTCTTCATCGAGACATAACAAGTAGCAATATTTTGTTAAACTCAGTGATGGAGGCTTTTGTCTCAGACTTTGGCACAGCTAGACTCCTTGATCCTGATTCATCCAATCAAACTCTATTAGTTGGCACTCATGGATATGTTGCTCCAGAACTTGCGTACACATTAAGAGTGACTGAAAAATGTGATGTTTATAGCTTTGGAGTGGTAGCTTTAGAAACTATGATTGGAAAGCATCCGGGAGAGCTGATTTCCTCTTTATCAAAGCCTTGGATTCAAAACATGATGATAAGAGATATCCTGGACTCACGACTCCCTCAGCCTCGCTTCCGAAAAGATATTCAAGATGTGATTCTTGTGGTAACAATAGCATTAGCATGTCTATCTTCCACACCAAAATCAAGGCCATCAATGAAGCAAGTGTCTCAGGAACTTTCAGTTTCCAAGCCGCCTTGTTTTATGCCCTTCCATGAAATGTCAGTCTACCATTTAATGAATCAAGAATTAACTTCCTGTAGGCAAGAACTAAGGGAAGTGTAA 1092 0.38 MVIILSITSVVVILFIGVLRQRVLNKIYFEKMPLVKNGDLFSIWNYDGKIAFKDIIEATEDFDIKYCIGTGAYGSVYKAVLPSGRIVALKKLHKTESENRSFEKSFCNEVKTLTEIRHRNIVKLHGFCLHTRCMFLVYEYMESGSLFCVLNNDAVAQELDWNKRVNIIKGIAHALAYMHHECVPPILHRDITSSNILLNSVMEAFVSDFGTARLLDPDSSNQTLLVGTHGYVAPELAYTLRVTEKCDVYSFGVVALETMIGKHPGELISSLSKPWIQNMMIRDILDSRLPQPRFRKDIQDVILVVTIALACLSSTPKSRPSMKQVSQELSVSKPPCFMPFHEMSVYHLMNQELTSCRQELREV 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1162 363 ProSitePatterns Protein kinases ATP-binding region signature. 68 90 IPR017441 GO:0005524
Glsi07g1162 363 ProSitePatterns Tyrosine protein kinases specific active-site signature. 186 198 IPR008266 GO:0004672|GO:0006468
Glsi07g1162 363 FunFam MDIS1-interacting receptor like kinase 2 141 335 - -
Glsi07g1162 363 SUPERFAMILY Protein kinase-like (PK-like) 43 329 IPR011009 -
Glsi07g1162 363 Pfam Protein kinase domain 66 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi07g1162 363 FunFam Leucine-rich repeat receptor protein kinase MSP1 29 140 - -
Glsi07g1162 363 Gene3D Transferase(Phosphotransferase) domain 1 141 335 - -
Glsi07g1162 363 ProSiteProfiles Protein kinase domain profile. 62 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi07g1162 363 PANTHER LEUCINE RICH REPEAT KINASE 2 5 333 - -
Glsi07g1162 363 Gene3D Phosphorylase Kinase; domain 1 30 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1162 Glsi-ChrGlsi07 17149602 17150787 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1162 2 234 Receptor kinase-like Gene Family AT4G08850 53.814 1.91e-75 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Glsi07g1162 Pkinase 3.2e-48 CL0016