Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1141 ATGAGGGGAGGGCTACTAGGATATTTCGAAATTGAGACTATGGTAGTGACCCGCGCAGGCGCAGTCGCAGTCGCAGAAGCCGGAGCAGAAGCTAGGAGTGAACAGAAGAGCAGCAGAGGGAGCATCTTCCATCTTCCAGCGGTCACCATGGGTCGTATGCACAGTCGTGGTAAGGGTATTTCTGCATCAGCTCTTCCCTACAAAAGAACTCCGCCCAGCTGGTTGAAGATCTCTTCCCAGGATGTAGAGGAGAACATCTGCAAGTTTGCCAAGAAGGGCCTAACACCATCACAAATTGGTGTTATTCTTCGTGACTCTCATGGTATTGCTCAGGTGAAAAGTGTAACTGGGAACAAGATTTTGCGTATACTGAAAGCCCATGGGCTTGCTCCTGAGATTCCCGAAGACTTGTACCACTTAATTAAGAAAGCTGTTTCCATTAGGAAACATTTGGAAAGGAATCGAAAGGATAAGGATTCCAAATTCAGATTGATTTTGGTTGAGAGCAGGATCCATCGCCTTGCCCGTTACTACAAGAAGACAAAGAAGCTTCCACCTGTGTGGAAATATGAATCTACAACTGCCAGCACACTTGTTGCCTAG 603 0.471 MRGGLLGYFEIETMVVTRAGAVAVAEAGAEARSEQKSSRGSIFHLPAVTMGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1141 200 ProSitePatterns Ribosomal protein S15 signature. 147 177 IPR000589 GO:0003735|GO:0005840|GO:0006412
Glsi07g1141 200 SMART Ribosomal_S13_N_2 50 109 IPR012606 GO:0003735|GO:0005840|GO:0006412
Glsi07g1141 200 Hamap 30S ribosomal protein S15 [rpsO]. 52 198 IPR023029 -
Glsi07g1141 200 FunFam 40S ribosomal protein S13 84 131 - -
Glsi07g1141 200 Gene3D - 132 200 - -
Glsi07g1141 200 Gene3D - 84 131 - -
Glsi07g1141 200 Pfam Ribosomal S13/S15 N-terminal domain 50 109 IPR012606 GO:0003735|GO:0005840|GO:0006412
Glsi07g1141 200 Pfam Ribosomal protein S15 123 193 IPR000589 GO:0003735|GO:0005840|GO:0006412
Glsi07g1141 200 CDD Ribosomal_S15p_S13e 119 192 IPR000589 GO:0003735|GO:0005840|GO:0006412
Glsi07g1141 200 FunFam 40S ribosomal protein S13 132 200 - -
Glsi07g1141 200 PANTHER RIBOSOMAL PROTEIN S15P/S13E 50 200 IPR023029 -
Glsi07g1141 200 SUPERFAMILY S15/NS1 RNA-binding domain 115 191 IPR009068 -
Glsi07g1141 200 SMART Ribosomal_S15_2 119 198 IPR000589 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1141 Glsi-ChrGlsi07 16500972 16503808 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1141 50 200 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 94.040 1.68e-103 293
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi07g1141 07 16500972 16503808 Glsi07g1141 07 16500972 16503808 ECH