Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1140 ATGTCCGTGCTTCTGTACCTCCTGCTGAAAGTTCAAGTCATCCTCATTTGTGCTTCTCCATCTCATTCCTCCACGGATGAGCTTGACACTCTCATGGTTATCAAGGACTCTCTAGATCCAGAGAACCGCTTGCTGACCTCGTGGACTCCCAACTCTGACCCTTGTAGTGGCGCTTTTGAGGGCGTGGCTTGCAACGAGCAAGGTCGTGTGACCAATATTTCACTGCAAGGAAAGGGTCTCTCTGGGCAGCTACCCCCAGCTATGGCTGAACTCAAGAGCTTGACGGGTCTCTACCTGCATTTCAATGTTCTGAATGGGAAGATACCAAAGAAGATTGCAAGTTTGACTGAGCTAAGTGATTTGTATCTCAATGTGAATAATCTCTCTGGCGATATCCCTCGTGAGATTGGCAATATGTCTAATCTTCAAGTTTTGCAGCTTTGTTATAACAAGTTTACTGGGGGTATACCAACCGAATTGGGAAAGTTGAGGAGGCTCAGTGTTCTTGCACTGCAATATAATCAATTGAATGGTGCAATTCCTGCGAGTTTGGGTGGAATGGAGACGTTGACGCGGTTGGATCTGAGCTTTAATACCCTTTTTGGTCCTATTCCAGTGAGATTAGCTAGTGCCCCTAAACTAGAAATTCTTGACATTCGAAACAATTCTCTCTCGGGCAATGTACCTGCAGCTCTAAAAAAACTCAGAGACCGCTTCCAGTACAACAACAACCCTGATTTATGTGGGACTGAATTTACCAATTTAGATTCTTGTGACTCTATAAGAAGTTATGACCCAGATAGACCTGAACCATTTGAACCCAGTAATACTTCTACAAAAGATCTTCCAGCATCAGTTAATCCACAAAATGAAAACTGCAGTGAGGCTCATTGTAAAAAGGCATTGCAATATTCAAAAATGGGTTTGGTTTTTGGGGTGATTGGAGTTATTGTTGCTTTTGTAGTTTCTGGACTTTTTGTCTTTGTGTGGCATCGTCGTGAGAAGCAGAAAATTGGAAGCACTATTGAAACTTGGACTAGTCGGCTTAGCACAGACCAGACCAAGGAAGTTAGCAGGAAAAGTGCATCTTCTCTGATCAGTTTGGAGTATTCTAATGGATGGGATCCAGTATCCAAAGGTCGAAGTGGTTATTCTCAGGAAGTTCTCGAGAGTTTTATGTTCAATCTAGAAGAGGTAGAGCGTGCAACTCAGTGCTTCTCAGAGGTAAATTTGTTGGGGAAGAGTAGTTTTTCAGCTATCTACAGGGGAATTTTGAGAGATGGATCAGTTGTGGTGGTAAAGTGCATCTCCAAGACAAGCTGCAAGTCTGATGAAACTGAATTCTTAAAAGGGTTGAAGATATTGACCTCATTAAAACATGAAAATCTAGTTAGGTTCAGAGGCTTTTGCTGTGCAAAAGGCAGGGGAGAATGCTTTCTTATTTATGATTTTGTGCCAAATGGGAATCTGTTACAGTTTCTCAATGTTAAGAAAGGTAATGGCAAGGTTCTTGAATGGTCCACCAGAGTATCCATCATTCATGGTATTGCCAAAGGTATTGGTTATCTTCATGGAAAGAAAGGAAGAAAACAGGCTCTAGTTCACCAGAACATATCGGCTGAAAAAGTTCTTCTTGATGTGCATTATAATTCATTACTTTCAGATTCAGGATTGCACAAACTCCTTGCAGATGATGTTGTCTTCTCCACCCTTAAAGCTGCTGCAGCCATGGGATACCTGGCACCAGAGTACACAACCACCGGTTGCCTGACTGAAAAGAGTGACATATATGCATTTGGGATTATAGTTTTCCAGCTTCTGACTGGAAAACGGGATATCACTCTGCTAACTCGCCTTCAGGCAGAAACATCTAGTTTCAAAGGTCTGATTGATATGAACCTTGAAGGGAAGTTCTTAGAATCAGAGGCAGCTAAACTGGCGAGAATTGCTCTGCTATGCACCCATGAATCTCCCAATGAACGACCGTCTATGGATTATGTAGCACAAGAACTGTGTTAA 2019 0.4245 MSVLLYLLLKVQVILICASPSHSSTDELDTLMVIKDSLDPENRLLTSWTPNSDPCSGAFEGVACNEQGRVTNISLQGKGLSGQLPPAMAELKSLTGLYLHFNVLNGKIPKKIASLTELSDLYLNVNNLSGDIPREIGNMSNLQVLQLCYNKFTGGIPTELGKLRRLSVLALQYNQLNGAIPASLGGMETLTRLDLSFNTLFGPIPVRLASAPKLEILDIRNNSLSGNVPAALKKLRDRFQYNNNPDLCGTEFTNLDSCDSIRSYDPDRPEPFEPSNTSTKDLPASVNPQNENCSEAHCKKALQYSKMGLVFGVIGVIVAFVVSGLFVFVWHRREKQKIGSTIETWTSRLSTDQTKEVSRKSASSLISLEYSNGWDPVSKGRSGYSQEVLESFMFNLEEVERATQCFSEVNLLGKSSFSAIYRGILRDGSVVVVKCISKTSCKSDETEFLKGLKILTSLKHENLVRFRGFCCAKGRGECFLIYDFVPNGNLLQFLNVKKGNGKVLEWSTRVSIIHGIAKGIGYLHGKKGRKQALVHQNISAEKVLLDVHYNSLLSDSGLHKLLADDVVFSTLKAAAAMGYLAPEYTTTGCLTEKSDIYAFGIIVFQLLTGKRDITLLTRLQAETSSFKGLIDMNLEGKFLESEAAKLARIALLCTHESPNERPSMDYVAQELC 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1140 672 FunFam Protein NSP-INTERACTING KINASE 2 377 484 - -
Glsi07g1140 672 CDD TM_EGFR-like 312 337 - -
Glsi07g1140 672 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 156 671 IPR046959 -
Glsi07g1140 672 Gene3D Phosphorylase Kinase; domain 1 378 484 - -
Glsi07g1140 672 SUPERFAMILY Protein kinase-like (PK-like) 383 671 IPR011009 -
Glsi07g1140 672 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Glsi07g1140 672 Gene3D Ribonuclease Inhibitor 175 249 IPR032675 -
Glsi07g1140 672 Pfam Leucine Rich Repeat 213 235 IPR001611 GO:0005515
Glsi07g1140 672 MobiDBLite consensus disorder prediction 263 288 - -
Glsi07g1140 672 Gene3D Transferase(Phosphotransferase) domain 1 485 672 - -
Glsi07g1140 672 MobiDBLite consensus disorder prediction 272 288 - -
Glsi07g1140 672 SUPERFAMILY L domain-like 24 235 - -
Glsi07g1140 672 Gene3D Ribonuclease Inhibitor 24 174 IPR032675 -
Glsi07g1140 672 ProSiteProfiles Protein kinase domain profile. 406 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi07g1140 672 FunFam Protein NSP-INTERACTING KINASE 2 137 259 - -
Glsi07g1140 672 Pfam Leucine rich repeat 140 200 IPR001611 GO:0005515
Glsi07g1140 672 FunFam Leucine-rich repeat receptor-like kinase 26 135 - -
Glsi07g1140 672 Pfam Protein tyrosine and serine/threonine kinase 410 671 IPR001245 GO:0004672|GO:0006468
Glsi07g1140 672 CDD STKc_IRAK 412 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1140 Glsi-ChrGlsi07 16488053 16491195 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1140 3 519 Miscellaneous Gene Families AT4G22730 50.564 0.0 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Glsi07g1140 PK_Tyr_Ser-Thr 1.2e-37 CL0016