Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1092 ATGAAGTGGAAGAGTGGAATGAATGACAATGAACAAAAGTCACAGGAGTGGCGTAACAGCTTTGGACATACGAAGGCAATGAATAGTCCCTTCAAAACTCCTGTGTCTGCAAAAGGGGGAAGGAAATTCAATAAGTTAAAAGTTCCTGAGGAAGGCAAACCTGGTCCTCAGACATCCATCTCAAATGCTGGTTCCCCTTCTCCTCTTGCTCCTGCTGGTAGCTATCGTTTTGACAGTTCCTTAGGTAATTTTGGAAGAACTGTAAATCAACAATTCCTTGAGGTGCAAAAGAGGAGAATATATGACATAACTAATGTCTTGGAAGGCATTGGTCTAATTGAGAAAAAGCTAAAGAACAGAATACATTGGAAGGGATTTGATTCTTCAATGTCTGAGGAGATGGATGGTGATGTCTCTACACTAAAGGCCCAAGTTGAGAAACTTTCCTTGGAAGAGTTCACTTTAGATTATCAAATAAGGGAAATGCAGGGAAGACTGAGGAGTTTGAGTGAAGATGAAAACAACCAGAACTTCATTTTCATGCTGAAAATTTTGAAATTTAACTTTTTATTTATACTACTAGTGCATTTCTGCTTGCAGAATGAAACTCTGATAGCAATTAAAGCTCCACATGGAACTACCCTAGAAGTCCCTCATCCTGAGGAAGTTGTTGACTATCCACATAGGAGATATAGAATCATTCTTAGAAGCACAATGGGTCCCATTGATGTCTATCTTGTCAGTCAATTTGAGGAGAAATTTGAAGAAGTGAATGGCGTTGAGCCCCACATGAGCTTTCCACTTGCTTTGGGTTCGGGGTCCAATGAACACCTAACAACAGGATTGGTTCCTATTGAATGCAATGTGAAGGGACTTGACCATCAGGCTCAACTTCCTTCTCATACATGCTCTGATCTAAATTCTTCACAAGAGTTGGTTGGGGGGATGATGAAGATTTTTCCTTCACATTTTGATAATGATACAGATTATTGGCTTCTATCGGATGCTGAAGTTAGCACTACAGATATGTGGAAAACAGATTGTATCCCTGATTTTGAATATCTGCGTGCCTTTCTGTTATCCTCTGTCCTTTTATTTCTTCTTCTCTCTTGA 1113 0.3971 MKWKSGMNDNEQKSQEWRNSFGHTKAMNSPFKTPVSAKGGRKFNKLKVPEEGKPGPQTSISNAGSPSPLAPAGSYRFDSSLGNFGRTVNQQFLEVQKRRIYDITNVLEGIGLIEKKLKNRIHWKGFDSSMSEEMDGDVSTLKAQVEKLSLEEFTLDYQIREMQGRLRSLSEDENNQNFIFMLKILKFNFLFILLVHFCLQNETLIAIKAPHGTTLEVPHPEEVVDYPHRRYRIILRSTMGPIDVYLVSQFEEKFEEVNGVEPHMSFPLALGSGSNEHLTTGLVPIECNVKGLDHQAQLPSHTCSDLNSSQELVGGMMKIFPSHFDNDTDYWLLSDAEVSTTDMWKTDCIPDFEYLRAFLLSSVLLFLLLS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1092 370 SUPERFAMILY "Winged helix" DNA-binding domain 89 126 IPR036390 -
Glsi07g1092 370 Pfam E2F transcription factor CC-MB domain 141 248 IPR032198 GO:0046983
Glsi07g1092 370 PANTHER TRANSCRIPTION FACTOR E2F 15 348 IPR015633 GO:0000978|GO:0006357
Glsi07g1092 370 CDD E2F_DD 138 249 IPR032198 GO:0046983
Glsi07g1092 370 SMART E2F_TDP_2 76 125 IPR003316 GO:0005667|GO:0006355
Glsi07g1092 370 MobiDBLite consensus disorder prediction 12 31 - -
Glsi07g1092 370 Pfam E2F/DP family winged-helix DNA-binding domain 93 125 IPR003316 GO:0005667|GO:0006355
Glsi07g1092 370 SUPERFAMILY E2F-DP heterodimerization region 138 249 IPR037241 -
Glsi07g1092 370 Gene3D - 74 127 IPR036388 -
Glsi07g1092 370 Gene3D - 131 249 - -
Glsi07g1092 370 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1092 Glsi-ChrGlsi07 14851667 14854517 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1092 20 354 E2F-DP Transcription Factor Family AT2G36010 51.648 1.60e-99 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Glsi07g1092 E2F_CC-MB 7.6e-23 No_clan