Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1090 ATGGAAGCGAGGGAAGGCATCAGTTCTGGGGTGACAGTGATAGGAGCAGAAGCTCCGTCAGCCTATCACGTGGCCCCAAGGAGTGAAGTTTCAAGCCAGAATCATGTTACTGAAGCAGCAGGAGCAGCTGTTGGTGCCTCACCAGTTAGTGTGGGATTGGATGGAACAACAATAAAGAAGAAACGGGGTAGACCAAGGAAATATGGGCCAGATGGGGCAGTCACTATGGCATTGTCACCATTGCCAATCTCATCTTCGGCGCCACCGTCTAATAACTTTTCAACTGGGAAACGGGGGAAATCAAAGGGGATGGAGTACAAGCAGCAAAATAAAGCTGGGATGGACTATCTAGGTGACTTGAATGGATGTTCTGTTGGTACAAACTTTATGCCCCACATCATCACCGTCAATGCTGGTGAGGATATTACAATGAAGGTTATATCATTTTCTCAACAAGGACCGCGGGCTATATGCATCTTATCTGCTAATGGTGTAATTTCAAATGTTACACTTCGTCAGCCTGATTCTTCTGGCGGCACTTTGACCTATGAGGGCCGTTTTGAGATTCTGTCCTTATCTGGATCGTTCATGCCTACTGATAACCAAGGAACAAGAAGCAGGTCAGGCGGGATGAGTGTCTCTTTGGCAAGCCCAGATGGGCGTGTTGTAGGTGGTGGAGTTGCAGGTCTTCTCGTAGCTGCCAGTCCTGTGCAGGTGGTGGTGGGAAGTTTTCTACCAAGCAGCCAGCAAGATCAGAAACCAAAGAAACCCAAGGCTGATCATGCTCCAGCAGCAGCTACTGTTACCCCAGCAATTGCAGTGTCTTCTGCACCGCCTTCTACTAATTCTGAGAAAGAGGATGGCATGGATGCACACCTGCTGCAAAATTCCAACACCTTTAACTCAAGCCTTAATTCTCCCAATTCCTTCCGAAGAGAAAACTGGGTTAACATGCACTCTATGCTGGACTCAAGAAAATCAACTACTGATATTAATATATCTTTGCCTGATAGTTAA 1017 0.47 MEAREGISSGVTVIGAEAPSAYHVAPRSEVSSQNHVTEAAGAAVGASPVSVGLDGTTIKKKRGRPRKYGPDGAVTMALSPLPISSSAPPSNNFSTGKRGKSKGMEYKQQNKAGMDYLGDLNGCSVGTNFMPHIITVNAGEDITMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTDNQGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLPSSQQDQKPKKPKADHAPAAATVTPAIAVSSAPPSTNSEKEDGMDAHLLQNSNTFNSSLNSPNSFRRENWVNMHSMLDSRKSTTDINISLPDS 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1090 338 FunFam AT-hook motif nuclear-localized protein 1-like 131 262 - -
Glsi07g1090 338 Gene3D - 131 259 - -
Glsi07g1090 338 MobiDBLite consensus disorder prediction 80 98 - -
Glsi07g1090 338 Pfam Plants and Prokaryotes Conserved (PCC) domain 131 244 IPR005175 -
Glsi07g1090 338 MobiDBLite consensus disorder prediction 80 102 - -
Glsi07g1090 338 ProSiteProfiles PPC domain profile profile. 126 267 IPR005175 -
Glsi07g1090 338 SUPERFAMILY AF0104/ALDC/Ptd012-like 129 248 - -
Glsi07g1090 338 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 33 302 IPR039605 GO:0003680
Glsi07g1090 338 CDD DUF296 131 221 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1090 Glsi-ChrGlsi07 14809426 14816093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1090 10 335 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 53.039 4.38e-103 305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi06g1056 06 14263427 14271645 Glsi07g1090 07 14809426 14816093 CCT
Glsi07g1090 07 14809426 14816093 Glsi07g1090 07 14809426 14816093 ECH