Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1076 ATGTCGGTCACTCTACACACGAACCTAGGCGACATCAAGTGTGAGATCTTCTGCGACGAGGTTCCCAAGACATCCGAGAATTTTTTAGCACTATGTGCAAGTGGTTATTATGATGGGACCATTTTTCATCGCAACATCAAAGGCTTTATGATTCAGGGTGGAGATCCAACTGGTACTGGCAAAGGGGGGACCAGTATATGGGGCAAAAAATATAACGATGAGATAAGAGAATCTCTTAAGCACAATGCGAGGGGAATATTGTCAATGGCCAACAGTGGGCCAAATACTAATGGAAGTCAATTTTTCTTAACTTATGCAAAGCAGCCACATTTGAATGGACTCTATACTGTGTTTGGCAAAGTAATTCATGGATTTGAAGTACTTGATCTCATGGAAAAGACTCAAACAGGCCCGGGGGACCGACCACTTGCAGAGATAAGGCTAAATCGAGTAACTATACATGCTAATCCGCTTGCTGGTCGGCCCAAAGGTTATGGCCCAAATACATATATTGAATTCCCCCAAAGGAACAAGAAAATTCAGCACAATGCGAGGGGAATATTGTCAATGGCCAACAGTGGGCCAAATACTAATGGAAGTCAATTTTTCTTAACTTATGCAAAGCAGCCACATTTGAATGGACTCTATACTGTGTTTGGCAAAGTAATTCATGGATTTGAAGTACTTGATCTCATGGAAAAGACTCAAACAGGCCCGGGGGACCGACCACTTGCAGAGATAAGGCTAAATCGAGTAACTATACATGCTAATCCGCTTGCTGGTTAG 786 0.4275 MSVTLHTNLGDIKCEIFCDEVPKTSENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKYNDEIRESLKHNARGILSMANSGPNTNGSQFFLTYAKQPHLNGLYTVFGKVIHGFEVLDLMEKTQTGPGDRPLAEIRLNRVTIHANPLAGRPKGYGPNTYIEFPQRNKKIQHNARGILSMANSGPNTNGSQFFLTYAKQPHLNGLYTVFGKVIHGFEVLDLMEKTQTGPGDRPLAEIRLNRVTIHANPLAG 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1076 261 SUPERFAMILY Cyclophilin-like 169 258 IPR029000 -
Glsi07g1076 261 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 171 253 IPR002130 GO:0000413|GO:0003755
Glsi07g1076 261 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 3 152 IPR002130 GO:0000413|GO:0003755
Glsi07g1076 261 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 85 100 IPR002130 GO:0000413|GO:0003755
Glsi07g1076 261 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 128 IPR002130 GO:0000413|GO:0003755
Glsi07g1076 261 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Glsi07g1076 261 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Glsi07g1076 261 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 100 112 IPR002130 GO:0000413|GO:0003755
Glsi07g1076 261 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 2 153 IPR044666 -
Glsi07g1076 261 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 37 54 IPR020892 GO:0003755|GO:0006457
Glsi07g1076 261 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 6 153 IPR002130 GO:0000413|GO:0003755
Glsi07g1076 261 FunFam Peptidyl-prolyl cis-trans isomerase 1 160 - -
Glsi07g1076 261 Gene3D - 161 261 IPR029000 -
Glsi07g1076 261 Gene3D - 1 160 IPR029000 -
Glsi07g1076 261 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 173 254 IPR002130 GO:0000413|GO:0003755
Glsi07g1076 261 CDD Cyclophilin_PPIL3_like 1 153 - -
Glsi07g1076 261 SUPERFAMILY Cyclophilin-like 1 158 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1076 Glsi-ChrGlsi07 14539854 14550136 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1076 177 258 U-box Gene Family AT5G67530 48.780 8.09e-20 86.7