Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1050 ATGTGGCGGTTTTGTAGCCCTGTTCTTCCTGACCAGAAGTACTGTAACAGGCACATGCAGAGAGGTGCTATAAGGCGTTTTGCAGACCATGAACAAACTGCTATTCCTCTTAGTTCTGCCGTTAACTACTACAGAAGCCACAGAGATCACACCCATCATTCAGAATGCTTATTGAGGAGTTCGAATACAAATCTTTCCATGTCAATCCGAGCAGATGAACCCTTAATACTACGTAGTGAGAAAATTCCTAGCAGTAGCAGTGACACCGATACCACCATCACTGACACCATGAATGAGGATTTTGAAGCTCTGAACACAATTCCTTTCTCTTTATCATTGGTCAACAGTGAAACCATAGAAGTATCTTGTACAGACAGATTCACCATGGTTCAGATTAACAAGAACAAGGTTCTTGTGATAATAGGCTCAACTGGCACTGGAAAATCCAAACTTTCCGTGAGCTTAGGCACTCAGTTTTCCTCTGAGATCATCAATTCTGACAAGATTCAAGTCTACAAAGGCCTTGACATCATCACCAACAAGATCCCCAGCTCCGAGCGCCGCGGTATCCCCCACCACCTCCTCGGCATCATTGAAAACCCGGACTTGGATTTCCCTGCCACCGAGTTTTGCAGCCATGTTCTGGAGGCTCTCGCGGTCATCACCGGCCGTGGGCGCGTGCCCATTATTGTTGGAGGATCTAACAACTACCTCGAAGCATTAATTGAGGATCCGAACTATGCCTTTCGTGCCAACTATGATTGCTGCTTCATTTGGCTCGATGTTTCTCTCCCAGTTTTGTTCCATTATCTGGACAAAAGGGTTGATCAAATGCTTCAGTCTGGGCTTTTAGATGAGATCAGAGAGGCTTTTGTGCCTGATGCTGATTATTCTCGTGGGGTTAGAAGAGCCATTGGGGTTCCTGAACTTGATCAATACATCAAGTTTGAGAGAGAAGCCGTCAATGAGAATTACAAGGAAGAGTTGCTAAGAGATGCCATTAGAAAAACCAAAGAGAATACCTACAAATTAGCTGAAGCCCAACTTGGGAAAATTCAGAGATTGAAGAATGAACGTCGGTGGGAGATGAACAAGCTTGATGCTACCAAAGTGTTCGAGGCTATAACAAAAGGGGAAGAGCATGAGAAAATGTGGGAAGAAGTGGTGTTCAAACCTAGTTTGAAGATAGTGCAGAGGTTTTTAGAAGAGGAAGAGAATGATAATAATTATAATTATATTAATAATAATAATTATATAGTTGAAGAAAATAGTTGGCCAAGCTTCGAGCCAAGTTTTAGAGATGGTGGCAACGGAATAAGGGGAGGGTGGAGAAGGTTTTGCCTGCCTTACGAGAACCCCACATGCATGAAAGTTTGCCCCTCACTTACCTCACAAACTCGAAGCAGCAAGTTAGCTATTACTAGGCTTCCTATTCAGCATCCTGTCTCCGTCATTTCAAGCACCTCTTGCTCATTTCCTGCCTTGCCGTCCTTTAAATTTTTCTAA 1506 0.4363 MWRFCSPVLPDQKYCNRHMQRGAIRRFADHEQTAIPLSSAVNYYRSHRDHTHHSECLLRSSNTNLSMSIRADEPLILRSEKIPSSSSDTDTTITDTMNEDFEALNTIPFSLSLVNSETIEVSCTDRFTMVQINKNKVLVIIGSTGTGKSKLSVSLGTQFSSEIINSDKIQVYKGLDIITNKIPSSERRGIPHHLLGIIENPDLDFPATEFCSHVLEALAVITGRGRVPIIVGGSNNYLEALIEDPNYAFRANYDCCFIWLDVSLPVLFHYLDKRVDQMLQSGLLDEIREAFVPDADYSRGVRRAIGVPELDQYIKFEREAVNENYKEELLRDAIRKTKENTYKLAEAQLGKIQRLKNERRWEMNKLDATKVFEAITKGEEHEKMWEEVVFKPSLKIVQRFLEEEENDNNYNYINNNNYIVEENSWPSFEPSFRDGGNGIRGGWRRFCLPYENPTCMKVCPSLTSQTRSSKLAITRLPIQHPVSVISSTSCSFPALPSFKFF 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1050 501 Gene3D - 134 401 IPR027417 -
Glsi07g1050 501 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 134 401 IPR039657 -
Glsi07g1050 501 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 264 363 - -
Glsi07g1050 501 FunFam Adenylate isopentenyltransferase 5, chloroplastic 264 363 - -
Glsi07g1050 501 Pfam IPP transferase 251 349 - -
Glsi07g1050 501 Pfam IPP transferase 170 244 - -
Glsi07g1050 501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 132 294 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1050 Glsi-ChrGlsi07 13625340 13634296 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1050 251 404 C2H2 Transcription Factor Family AT2G27760 31.667 4.48e-19 87.8