Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0979 ATGGTGAGAGGAAAGACTCAGATGAAGCGTATAGAGAACAACACAAGCCGGCAAGTCACCTTCTCAAAGCGGCGAAATGGGCTGCTAAAGAAGGCTTTTGAGCTATCAGTTTTGTGTGATGCTGAGGTAGCTCTTATCATCTTCTCTCCGAGAGGGAAGCTTTATGAATTTGCAAGCTCCAGCATGCAGGAGACAATTGAACGCTACCGTCATTATAATATGGATACTGTAACAGACAGCACATCAGTTGAACAAAATTTGCAGCATTTAAAGCAAGAAGCAGCAAGTATGATGATGAAGATTGAGCTTCTTGAAGAAACTCTTGGGAGAAGGTTTGGGGTCATGCTCTGTAGAAGAACTACAACAGATAGAACAACAGTTGCAAAAGAGTGTCATCAAAATTCGAGCGAGAAAGGTTAA 420 0.4214 MVRGKTQMKRIENNTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQETIERYRHYNMDTVTDSTSVEQNLQHLKQEAASMMMKIELLEETLGRRFGVMLCRRTTTDRTTVAKECHQNSSEKG 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0979 139 Coils Coil 87 107 - -
Glsi07g0979 139 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Glsi07g0979 139 FunFam MADS-box protein SOC1 14 95 - -
Glsi07g0979 139 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977|GO:0045944
Glsi07g0979 139 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Glsi07g0979 139 SUPERFAMILY SRF-like 3 78 IPR036879 GO:0003677|GO:0046983
Glsi07g0979 139 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Glsi07g0979 139 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Glsi07g0979 139 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 107 - -
Glsi07g0979 139 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Glsi07g0979 139 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Glsi07g0979 139 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Glsi07g0979 139 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0979 Glsi-ChrGlsi07 10241873 10406127 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0979 1 113 MADS-box Gene Family AT2G45660 72.566 1.44e-54 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Glsi07g0979 SRF-TF 2.7e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi07g0979 07 10241873 10406127 Glsi07g0979 07 10241873 10406127 ECH