Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0960 ATGGCAGGAGCTGAAGCCACGAAATATGCTTCTGCTAAGAACAATATGGTTCAGTCTAACAAAAGCACCACCAGAAGGTTCATTGGGGTAAGGCAAAGGCCTTCGGGAAGGTGGGTGGCTGAGATCAAAGACTCCTCTCAGCATGTGAGGTTATGGCTAGGAACCTATGACACACCAGAGGAAGCAGCTAGGGCTTATGATGAAGCTGCTCGAGCCCTCCGTGGAGAAAATGCCCGAACCAACTTTGGCCAAACCACAGTCTCTAATTCCCCTTCTAATAATGAAGGCCGTGAGTTAAGCTTTGCTTCTTTGAAAGCGAAGCTAAGCAAGAATCTGCAGAATATCATGGCTAGATCAGCAAGTGAAGATAAGTACTCATCATCGAAGAGTAGGGTGAGTGATCATTTTACCTTTGCTAGCATATTTCACCAAAGGAGTTATTGCCATGACCAGTACCAATTTCCTGATATGAAGAACATGGAGAATGTGGTGCAGCCTAGCATTATTGTGCCTCCTGTTGTTGAAAGCGAGCCTGCGTCAGCTGGTTCGTGGGAAACTTCTATTAGTGTTTCTGATTGTAGCCTGGAGTGGGTCGGGTTCCAGAAACCCGGGTTTGACTCCGATGTGTCCGATAAAGGGGAGGTTAGTGTTGGCGATGAAGGGTTTTTGGATCAATTGATGGGGTGGGTGGATAGCCCAGAGAGTTCAAGCAGTAAGAGGCTTAAGGTCTCTTCTTCCGTATTTGTGCCTCCTACTTTCAGCGGTTCTCCATATAATTATGGGTATGGCTCTCTACAAGGTGAAAACTAG 810 0.4667 MAGAEATKYASAKNNMVQSNKSTTRRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAARAYDEAARALRGENARTNFGQTTVSNSPSNNEGRELSFASLKAKLSKNLQNIMARSASEDKYSSSKSRVSDHFTFASIFHQRSYCHDQYQFPDMKNMENVVQPSIIVPPVVESEPASAGSWETSISVSDCSLEWVGFQKPGFDSDVSDKGEVSVGDEGFLDQLMGWVDSPESSSSKRLKVSSSVFVPPTFSGSPYNYGYGSLQGEN 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0960 269 MobiDBLite consensus disorder prediction 1 21 - -
Glsi07g0960 269 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Glsi07g0960 269 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Glsi07g0960 269 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Glsi07g0960 269 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Glsi07g0960 269 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 21 138 - -
Glsi07g0960 269 Pfam AP2 domain 26 75 IPR001471 GO:0003700|GO:0006355
Glsi07g0960 269 SUPERFAMILY DNA-binding domain 27 83 IPR016177 GO:0003677
Glsi07g0960 269 Gene3D AP2/ERF domain 25 84 IPR036955 GO:0003700|GO:0006355
Glsi07g0960 269 FunFam ethylene-responsive transcription factor RAP2-11 25 84 - -
Glsi07g0960 269 CDD AP2 26 82 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0960 Glsi-ChrGlsi07 9649832 9650641 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0960 11 90 AP2-EREBP Transcription Factor Family AT5G19790 57.500 1.66e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi07g0960 AP2 8.9e-16 CL0081