Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0959 ATGAAACCCATCTTTTGTGGAAATCTGGATTTTGATTCGCGCCAGTCTGATGTCGAGAGGCTTTTCAGAAGATATGGGAAAGTTGATAGGGTGGACGTAAAATCCGGCTTTGCTTTTGTCTACATGGAAGATGAGCGTGATGCTGAGTATGCAATTAGAAGACTTGATAGAACAGAATTTGGTAGGAAGAGACGCCGAATTCGTGTTGAGTGGACTAAGCAAGAACGTGATAATAGAAGACCGGGTGATTCAAGAAGATCTTCAACTAATATAAGACCATCTAAGACATTATTTGTCATAAATTTTGATCCAGTTCATGCCAGGACAAGGGATGTTGAGAGGCACTTTGAGCCTTATGGGAAAATATTGAATATAAGGATCAGAAGGAATTTTGCTTTTGTTCAGTATGAAACTCAGGAGGACGCTACTAAAGCGTTGGAGGCAACTAACATGAGCAACTTTATGGATCGGGTTATCACAGTGGAATATGCAATAAGAGATGACGATGATAGAAAGAATGAATACAGTCCTGGTAGAAGTCCTGGTAGAAGAGGCCGTGACATCTCCCCTGATGGGAGATATGGTCGCCGGAGATCCCCTAGTCCATACGGTAGAGGTAGGGGTAGCCCAGACTACGGCCATGGATCAAATCCAACTTCCAGACCAGAACCAAGAGGAAGCCCAAGGTATGAACGAGCTGAAAGCCCAATAAATGGGAGATATGACAGGTTTCTGGCAGCTCTGGTGATCAATTCTACAACTACCATGGTGGAAGAACGTGGAGATGAAGCAGTTGCAGTTGATGCCCGTTCCACAGAAGACTGGTTGTTGAAGGCTCAGGAACTTGTACCTATTGCTCTTGAAAAGGCAAAAGAGGTGAAGGGGTTCGCTGGTAGGTGGAAAATGATAATTTCAAAGCTAGAACAGATCCCATCCTGTTTATCGGACTTGTCTAGCCACCCTTGCTTCTCCAAGAATACTCTTTGCAAGGAGCAATTGCAGGCAGTGTTGAAGACACTCAAGGAAGCCATTGAATTGGCCGAGTTTTGCTTGAAGGAGAAGTATGGGGGTAAGCTTCGGATGCAGAGTGATCTCGATGCGCTATCAGGGAAATTGGATTTGAATTTGAGGGATTGTGGCCTATTGATCAAGACTGGTGTTCTTGGTGAGTCTACTTTGCCATTGGCTGTGTCTGTGGGCGAATCAGATGCTGCAATTCACAGCAATGTGAGGGAGTTACTCGCACGCCTTCAGATCGGGCACTTGGAAGCAAAGCACAGAGCTTTAGACAGTCTTGTTGAAGTTATGAAAGAAGAAGAAAAGAATGTTTTAGATGCTATAGGAAGGAGCAATATCGCTGCTTTGGTTCAACTGCTAACAGCTACATCTCCTAGGATAAGGGAAAAGACAGTTACTGTTATATGCTCACTCGCAGAATCCGGGAGCTGCGAGAATTGGCTAGTTTCTGAAGGAGTTCTGCCACCTCTTATTCGACTTGTTGAATCGGGTGGTGCTGTGGGTAAAGAGAAGGCTTCAATATGTCTTCAGAGGTTGTCTATGTCAACAGAGACAGCCCGGGAAATAGTAGGACATGGTGGGGTTCGTGCACTCATTGAACTCTGTGAAACCGGTGATTCTGTGTCCCAGGCTGCTGCTGCTTGTACTCTGAAGAATATATCAGCTGTCCCTGAAGTGAGACAAGCTTTGGCCGAAGAAGGGATTGTGAAGACTATGATCAATCTCCTTGATTATGGAATGTTATTGGGCTCCAAAGAGTATGCTGCTGAGTGCTTGCAAAACCTCACTGCAAGCAATGAGAATATGAGAAGGTCTGTTATATCAGAAGGGGGTTTTAAGAGTCTTCTGGCTTATCTTGATGGTCCACTTCCTCAAGAATCTGCGGTTGGAGCAATAAGGAATCTGGTTGGATCAGTTTCTGAGGAAGATTTGGTTTCTCTCGGTTTCCTTCCTCGTTTGGTTCACGTGTTAAATTTGGGATCATTGGGAGCTCAGCAAGCTGCTGTGTCTGCAATCTGCCGAGTTTGCAGCTCAACCGAGATAAAGAAAATGGTTGTGGAAGTTGGGTGCATCCCTCACCTTGTCAAGATGCTTGAGGCCAAATCAAACAGTGCCAGAGAGGTTGCTGCACAGGCAATTGCAAGCTTAATGACACTGTCACAAAATCGCCGAGAGGTCAAGAAGAACGATAAAAGTGTGCCGAATTTGGTTCAGTTGCTCGATCCAAGTCCACCCAACACCGCAAAGAAATATGCAGTTTACTGCCTCGGATCGCTTTCTTCGTGTAGGAAATGCAAGAAGTTGATGATCTCATATGGGGCAATTGGGTATCTGAAGAAGCTTACAGAGATGGACATTCCAGGAGCCAAAATGCTACTCGAGCGATTGGAAAGAGGGAAATTGAGAAGCTTGTTTAGCAGAAAGTAG 2445 0.4503 MKPIFCGNLDFDSRQSDVERLFRRYGKVDRVDVKSGFAFVYMEDERDAEYAIRRLDRTEFGRKRRRIRVEWTKQERDNRRPGDSRRSSTNIRPSKTLFVINFDPVHARTRDVERHFEPYGKILNIRIRRNFAFVQYETQEDATKALEATNMSNFMDRVITVEYAIRDDDDRKNEYSPGRSPGRRGRDISPDGRYGRRRSPSPYGRGRGSPDYGHGSNPTSRPEPRGSPRYERAESPINGRYDRFLAALVINSTTTMVEERGDEAVAVDARSTEDWLLKAQELVPIALEKAKEVKGFAGRWKMIISKLEQIPSCLSDLSSHPCFSKNTLCKEQLQAVLKTLKEAIELAEFCLKEKYGGKLRMQSDLDALSGKLDLNLRDCGLLIKTGVLGESTLPLAVSVGESDAAIHSNVRELLARLQIGHLEAKHRALDSLVEVMKEEEKNVLDAIGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGGAVGKEKASICLQRLSMSTETAREIVGHGGVRALIELCETGDSVSQAAAACTLKNISAVPEVRQALAEEGIVKTMINLLDYGMLLGSKEYAAECLQNLTASNENMRRSVISEGGFKSLLAYLDGPLPQESAVGAIRNLVGSVSEEDLVSLGFLPRLVHVLNLGSLGAQQAAVSAICRVCSSTEIKKMVVEVGCIPHLVKMLEAKSNSAREVAAQAIASLMTLSQNRREVKKNDKSVPNLVQLLDPSPPNTAKKYAVYCLGSLSSCRKCKKLMISYGAIGYLKKLTEMDIPGAKMLLERLERGKLRSLFSRK 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0959 814 MobiDBLite consensus disorder prediction 169 234 - -
Glsi07g0959 814 FunFam Serine/arginine-rich splicing factor RS31 87 177 - -
Glsi07g0959 814 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Glsi07g0959 814 SUPERFAMILY RNA-binding domain, RBD 4 170 IPR035979 GO:0003676
Glsi07g0959 814 CDD RRM2_AtRSp31_like 96 165 - -
Glsi07g0959 814 SUPERFAMILY ARM repeat 408 791 IPR016024 -
Glsi07g0959 814 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 63 IPR000504 GO:0003723
Glsi07g0959 814 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 159 IPR000504 GO:0003723
Glsi07g0959 814 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 166 IPR000504 GO:0003723
Glsi07g0959 814 Coils Coil 422 442 - -
Glsi07g0959 814 SMART arm_5 684 724 IPR000225 GO:0005515
Glsi07g0959 814 SMART arm_5 725 767 IPR000225 GO:0005515
Glsi07g0959 814 SMART arm_5 439 479 IPR000225 GO:0005515
Glsi07g0959 814 SMART arm_5 604 643 IPR000225 GO:0005515
Glsi07g0959 814 SMART arm_5 562 603 IPR000225 GO:0005515
Glsi07g0959 814 SMART arm_5 644 683 IPR000225 GO:0005515
Glsi07g0959 814 SMART arm_5 521 561 IPR000225 GO:0005515
Glsi07g0959 814 CDD RRM1_AtRSp31_like 2 73 - -
Glsi07g0959 814 Gene3D - 1 86 IPR012677 -
Glsi07g0959 814 MobiDBLite consensus disorder prediction 169 194 - -
Glsi07g0959 814 SMART rrm1_1 3 70 IPR000504 GO:0003723
Glsi07g0959 814 SMART rrm1_1 96 162 IPR000504 GO:0003723
Glsi07g0959 814 Gene3D - 408 802 IPR011989 -
Glsi07g0959 814 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 695 731 IPR000225 GO:0005515
Glsi07g0959 814 Gene3D - 87 217 IPR012677 -
Glsi07g0959 814 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 267 812 - -
Glsi07g0959 814 FunFam Serine/arginine-rich splicing factor RS31 1 85 - -
Glsi07g0959 814 Pfam Armadillo/beta-catenin-like repeat 685 722 IPR000225 GO:0005515
Glsi07g0959 814 Pfam Armadillo/beta-catenin-like repeat 525 561 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0959 Glsi-ChrGlsi07 9632318 9643204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0959 670 792 U-box Gene Family AT3G54790 31.707 4.13e-07 52.0