Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0949 ATGAGTTTTGGGGGTTTTCTTGACACTAACTGGGGTGTAGGTGACAGAATCGTAGCCGATATTCCTTACTGCAACGGTACCAACCATAACAAAAGCAACGGTACCAACCATAACAGCAGCAACGATAGAATGCCCTCTGGTACAATCTCACAGCCTGGCCTCGTTTCTCCCACTTTGGCCAAATCCATGTTCAACTCCCCTGGGCTCTCTCTCGCACTACAAACGAATCTAGATGAGCAACAAGGGGAGCCGAATAGAATGCCTGAAAATTACGAGCCCAATGTTGGGAGAAGGAGTAGGGAAGAAGAGCACGAAAGCAGATCTGGCAGTGATAATATGGAAGGTGCCTCCGGAGACGATCAGGAAGCCGCCGACCACCCGCCGAGAAAAAAACGCTATCACCGACATACACCTCAGCAAATACAAGAGCTTGAAGGTTTGTTCAAGGAGTGTCCTCACCCAGATGAGAAGCAAAGACTGGAACTTAGCAGAAGGCTTTGCTTGGAAACTAGGCAGGTGAAATTCTGGTTCCAAAATCGAAGAACTCAGATGAAGACCCAATTGGAACGCCATGAAAACACGCTGCTTAGGCAAGAGAACGATAAGCTCAGAGCCGAGAACATGTCTATAAGGGACGCCATGAGAAATCCCATATGCTCAAATTGTGGAGGTCCAGCTATTATTGGTGAGATTTCACTTGAGGAACAGCATCTCAGGATGGAAAATGCCAGATTAAAGGATGAGCTAGACCGAGTTTGTGCTCTTGCCGGTAAGTTTCTGGGTCGCCCCATTTCTTCATTGACAAGCTCGATTCCTCCATTGCCAAACTCAAGCTTGGAGCTAGGAGTTGGAAGCAATGGGTTTGGTGGTATGAGCACTGTGCCTACAACATTGCCTCTTGGGCCTGATTTTGGGATGGGTATTTCTAGCCCTTTGCCTCCTCCGAGTAGACCACCAGCGTCTGTGGTGGCTTCTGGCCTTGATAGGTCTATAGAGAGGACTATGCTTCTAGAGCTTGCTTTGGCTGCCATGGACGAGTTGGTGAAGATGGTTCATTCTGATGAACCTCTTTGGATAAGAAGTTTAGAAGGGGGAAGAGAAATTCTGAACCATGAAGAGTACATGAGGACTTTTTCTCCTTGCATTGGCTTGAGACCCAATGGTTTCGTATCCGAGGCCTCTAGGGAGACTGGGATGGTCATCATAAACAGCTTGGCCCTTGTTGAAACTCTAATGGATTCAAATCGATGGGCAGAAATGTTTCCTTGTTTGATAGCAAGAACCTCCACCACTGAAGTGGTATCTAATGGAATAAATGGAACCAGAAATGGTGCACTCCAACTAATGCATGCTGAACTTCAAATTCTTTCGCCTCTGGTTCCGGTTCGTGAGGTCAATTTCCTCCGCTTTTGCAAGCAGCACGCAGAGGGGGTGTGGGCTGTGGTAGATGTGTCCATAGATACCATCCGAGAAACTTCTGGCGCACCCATGTTTTTGAACTGCAGGAGGCTTCCTTCTGGATGTGTGGTACAAGATATGCCTAATGGTTACTCCAAGGTGACTTGGGTGGAGCATGCAGAATATGATGAAATCCAGGTCCACCAGCTCTATAGACCCTTGCTAAGCTCGGGCATGGCCTTTGGTGCCCAACGTTGGGTCGCCACCCTTCAACGCCAATGCGAATGCCTCGCCATCTTAATGTCCTCCTCAGTTTCCTCTCGGGATCACACTGCCATAACAGCGGGTGGCCGGAGAAGCATGCTGAAGCTGGCACAGCGAATGACGAACAACTTCTGCGCAGGAGTCTGTGCTTCGACGGTGCACAAATGGAACAAGCTGAACGCTGGAAACGTCGGAGAAGACGTCCGGGTCATGACCCGGAAGAGCGTGGACGATCCCGGCGAGCCACCGGGGATAGTACTAAGCGCAGCCACCTCCGTTTGGCTCCCGATTTCGCCGCAGAGACTGTTCGATTTCCTACGTGACGAGCGACTCCGAAGCGAGTGGGACATACTTTCCAACGGTGGGCCCATGCAGGAGATGGCCCACATCGCCAAAGGCCAAGACCACGGCAACTGCGTCTCCCTCCTGCGAGCCAGTGCGATGAATGCAAACCAGAGTAGCATGCTGATACTGCAGGAGACATGCATAGACGCGGCGGGATCACTTGTGGTGTACGCGCCGGTGGATATTCCGGCCATGCACGTAGTGATGAATGGCGGTGATTCGGCGTACGTGGCGTTGCTGCCGTCGGGGTTTGCCATTGTCCCGGATGGGATGGGGTCACGTGGGTCCCAAACGGCAGCAATAAATGGAAACAGCAATGGTGACGGTGATGGTGGCGGCGGAGCTGAACAAAGAGTAAGTGGGTCCCTTCTAACGGTGGCGTTTCAAATTCTTGTGAATAGCCTCCCCACGGCCAAGCTCACGGTGGAGTCCGTGGAAACGGTTAACAACCTCATCTCATGCACCGTTCAGAAAATAAAGGCTGCGCTTCCCTGTAAAAGCTGA 2511 0.5102 MSFGGFLDTNWGVGDRIVADIPYCNGTNHNKSNGTNHNSSNDRMPSGTISQPGLVSPTLAKSMFNSPGLSLALQTNLDEQQGEPNRMPENYEPNVGRRSREEEHESRSGSDNMEGASGDDQEAADHPPRKKRYHRHTPQQIQELEGLFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPICSNCGGPAIIGEISLEEQHLRMENARLKDELDRVCALAGKFLGRPISSLTSSIPPLPNSSLELGVGSNGFGGMSTVPTTLPLGPDFGMGISSPLPPPSRPPASVVASGLDRSIERTMLLELALAAMDELVKMVHSDEPLWIRSLEGGREILNHEEYMRTFSPCIGLRPNGFVSEASRETGMVIINSLALVETLMDSNRWAEMFPCLIARTSTTEVVSNGINGTRNGALQLMHAELQILSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPMFLNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDEIQVHQLYRPLLSSGMAFGAQRWVATLQRQCECLAILMSSSVSSRDHTAITAGGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLNAGNVGEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPISPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNANQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGMGSRGSQTAAINGNSNGDGDGGGGAEQRVSGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALPCKS 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0949 836 Pfam Homeodomain 130 185 IPR001356 GO:0003677
Glsi07g0949 836 Pfam START domain 338 562 IPR002913 GO:0008289
Glsi07g0949 836 Coils Coil 181 213 - -
Glsi07g0949 836 FunFam Homeobox-leucine zipper protein HDG1 117 203 - -
Glsi07g0949 836 CDD START_ArGLABRA2_like 335 561 - -
Glsi07g0949 836 MobiDBLite consensus disorder prediction 78 137 - -
Glsi07g0949 836 MobiDBLite consensus disorder prediction 28 61 - -
Glsi07g0949 836 SMART HOX_1 128 191 IPR001356 GO:0003677
Glsi07g0949 836 SUPERFAMILY Homeodomain-like 114 187 IPR009057 -
Glsi07g0949 836 SUPERFAMILY Bet v1-like 590 829 - -
Glsi07g0949 836 MobiDBLite consensus disorder prediction 766 785 - -
Glsi07g0949 836 SMART START_1 338 562 IPR002913 GO:0008289
Glsi07g0949 836 FunFam Homeobox-leucine zipper protein GLABRA 2 338 561 - -
Glsi07g0949 836 Gene3D - 116 203 - -
Glsi07g0949 836 ProSiteProfiles 'Homeobox' domain profile. 127 187 IPR001356 GO:0003677
Glsi07g0949 836 ProSiteProfiles START domain profile. 329 565 IPR002913 GO:0008289
Glsi07g0949 836 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 126 832 IPR042160 -
Glsi07g0949 836 CDD homeodomain 129 187 IPR001356 GO:0003677
Glsi07g0949 836 MobiDBLite consensus disorder prediction 93 110 - -
Glsi07g0949 836 SUPERFAMILY Bet v1-like 331 562 - -
Glsi07g0949 836 ProSitePatterns 'Homeobox' domain signature. 162 185 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0949 Glsi-ChrGlsi07 9507442 9512882 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0949 1 836 Homeobox Transcription Factor Family AT3G61150 65.105 0.0 1051
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Glsi07g0949 START 9.1e-56 CL0209