Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0944 ATGCATAGTTCAAACCCACCACCTTCTTCTCCTTCCGTTACCGCCATGGACAGCTCACCGCTTCTCAGTCAATCCATCTCCGACCACCTCCTCCGGAGCCGCCGCTTCATTCACCGTACTCCGCCGCCTTTACGAACAGCTGCCCGGTTCTTTCGCCGTGCTAGCGGGCGGCGCATGATGCTTCGGGAGCCCTCGGTGCAGGTTCGTGAGAACGCGGCGGAGCAGCTGGAGGAGCGCCAGAGTGACTGGGCGTACTCCAAGCCGGTGATAATATTGGATGTCTTGTGGAACTTGGCGTTTGTAGCAATTGGGCTTACCGTATTGGGACTAAGTATGAAGGAAAAGCCATCTGTGCCTTTGAGGCTGTGGATAGTGGGTTACATGTTGCAGGGTTTGTTTCACTCTCTGTGTGTGATTGTGGAATACAGGCGGCGGAGACTAGCAAGTTCGACGATGTTGGAGCAGAACGGGGGTTGGGAAAGTGTTGGGGATTCGAATTTTAGTTCTGGGAGTGATGGAGAGGATTCTGCTACAGAGCAGCTCCAGGAGCATGATGATAACAGCATCATGAAGCACATAGAGTCTGCAAATACCATGCTTTCATTCATATGGTGGATTATTGGATTCTACTGGATAACTGCTGGTGGTCAGAGCTTGACACAGCATTCACCTCAGCTTTACTGGCTTTGTATTACATTTCTTGCTTTCGACATCGTGATTGTATTGATCTGTGTTGCTGTTGCATGTCTTATTGGTATCGCTGTTTGCTGCTGTCTGCCATGCATACTTGCTATTTTGTATGTGGTGGCAGATCAGGAAGGGGCAACCGAAGAAGAGATCGGTCAGTTGCCCAAATACAAGTTCCGGAGGATAGATGGATTTAAGAAAGTTGATGGTGATATTCAAGAATCGTCCAGTGGAATAATGACAAAATGTGATAGTGATGCACCCGCAGAACATGTTCTTTCCTCAGAAGATGCAGAATGCTGTATCTGCCTTTCTGCCTATGATGATGGTGCTGAACTTAGAGAACTTCCTTGTAACCACCATTTTCACTGCGCCTGCATCGACAAGTGGTTGCACATCAGTGCTACCTGCCCTCTCTGCAAGTTCAACATTTTGACGACAGAAAACCAACATCAAGAAGTTTGA 1152 0.4861 MHSSNPPPSSPSVTAMDSSPLLSQSISDHLLRSRRFIHRTPPPLRTAARFFRRASGRRMMLREPSVQVRENAAEQLEERQSDWAYSKPVIILDVLWNLAFVAIGLTVLGLSMKEKPSVPLRLWIVGYMLQGLFHSLCVIVEYRRRRLASSTMLEQNGGWESVGDSNFSSGSDGEDSATEQLQEHDDNSIMKHIESANTMLSFIWWIIGFYWITAGGQSLTQHSPQLYWLCITFLAFDIVIVLICVAVACLIGIAVCCCLPCILAILYVVADQEGATEEEIGQLPKYKFRRIDGFKKVDGDIQESSSGIMTKCDSDAPAEHVLSSEDAECCICLSAYDDGAELRELPCNHHFHCACIDKWLHISATCPLCKFNILTTENQHQEV 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0944 383 MobiDBLite consensus disorder prediction 159 176 - -
Glsi07g0944 383 PANTHER TARGET OF ERK KINASE MPK-1 54 378 - -
Glsi07g0944 383 Pfam Ring finger domain 328 370 IPR001841 -
Glsi07g0944 383 MobiDBLite consensus disorder prediction 159 181 - -
Glsi07g0944 383 SUPERFAMILY RING/U-box 321 376 - -
Glsi07g0944 383 SMART ring_2 329 369 IPR001841 -
Glsi07g0944 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 314 383 IPR013083 -
Glsi07g0944 383 ProSiteProfiles Zinc finger RING-type profile. 329 370 IPR001841 -
Glsi07g0944 383 FunFam E3 ubiquitin-protein ligase At1g12760 315 380 - -
Glsi07g0944 383 CDD RING-H2_PA-TM-RING 328 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0944 Glsi-ChrGlsi07 9441650 9447767 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0944 27 380 C3H Transcription Factor Family AT1G68070 48.189 2.43e-112 330