Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi07g0938 | ATGCCCCTGATTTTCTCTTCAATGTTGGGAACCAGTTATCCATCGCAAATGTTTCTCGGTCTTCATTTTGTTCTCTTTGGTTTTGATCCCGTCAGCGAAAGCAAGGTTCGATTCAAGCTTATAAATGGCGGTGGAGTTGATGTAGGTCATTACAGTCCAAGTTGTACACATGTCATTGTGGGCAAGCTTGCATATGATGATCCTATTTGCGTTGCTGCAAGAAATGATGGGAAGACGCTTGTCACTGCGTTGTGGGTTGATCATAGTGCCGATATTGGAATGCCTGTTGATGCTGCCTCGGTTATGTACAGGCCTCTAAAAGATTTAAATGGAATACCGGGTGCCAAGAATTTGATTGTGTGCTTGACGGGGTATCAACGTCAGGATCGGGATGACATTATGACAATGGTTGGCCTGATGGGTGCACAATTTTCAAAACCATTGGTAGCAAACAAGGTTACTCATCTTATATGCTACAAATTTGAAGGGGAGAAGTATGAGCTTGCCAAGAGATTGAAGACAATTAAGTTAGTGACTCATCGGTGGCTGGAAGATTGTTTTAAAGATTGGGTGCTTCTTCCTGAAGATAAATATATATCAAGAGGTGAGGCATCTTATCATGTCGCAATGCAAAATGCACCTAGTCCTTGTCTGCTCTCGCCTTATGAATCTGCAATGTTCACTGTAATGTTGCAAAATGTTCTTGGGGGGGGGGAGATAATGGCGGCAGAGGCTAAAGATTCTGAAGAAGAAGCTGAAGATCACGTGCCAGGGAAATCTGGGGGAAGAAATCTAATCAAGAGTCCCGTTAGTTCAAAAATTAGTACAGCTACAACCCATAAATTGTCAAAATCAGCGAGAGAGGCAGCAAATGCCTTCCAGATTCTACTGCTCCTGAGGGATCGCTAA | 909 | 0.4323 | MPLIFSSMLGTSYPSQMFLGLHFVLFGFDPVSESKVRFKLINGGGVDVGHYSPSCTHVIVGKLAYDDPICVAARNDGKTLVTALWVDHSADIGMPVDAASVMYRPLKDLNGIPGAKNLIVCLTGYQRQDRDDIMTMVGLMGAQFSKPLVANKVTHLICYKFEGEKYELAKRLKTIKLVTHRWLEDCFKDWVLLPEDKYISRGEASYHVAMQNAPSPCLLSPYESAMFTVMLQNVLGGGEIMAAEAKDSEEEAEDHVPGKSGGRNLIKSPVSSKISTATTHKLSKSAREAANAFQILLLLRDR | 302 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi07g0938 | 302 | Gene3D | BRCT domain | 7 | 102 | IPR036420 | - | |
| Glsi07g0938 | 302 | SUPERFAMILY | BRCT domain | 14 | 98 | IPR036420 | - | |
| Glsi07g0938 | 302 | MobiDBLite | consensus disorder prediction | 246 | 267 | - | - | |
| Glsi07g0938 | 302 | Pfam | twin BRCT domain | 118 | 182 | IPR001357 | - | |
| Glsi07g0938 | 302 | MobiDBLite | consensus disorder prediction | 246 | 260 | - | - | |
| Glsi07g0938 | 302 | SUPERFAMILY | BRCT domain | 116 | 200 | IPR036420 | - | |
| Glsi07g0938 | 302 | SMART | BRCT_7 | 113 | 190 | IPR001357 | - | |
| Glsi07g0938 | 302 | SMART | BRCT_7 | 15 | 93 | IPR001357 | - | |
| Glsi07g0938 | 302 | ProSiteProfiles | BRCT domain profile. | 116 | 200 | IPR001357 | - | |
| Glsi07g0938 | 302 | PANTHER | BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED | 14 | 199 | IPR044254 | - | |
| Glsi07g0938 | 302 | Gene3D | BRCT domain | 106 | 215 | IPR036420 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi07g0938 | Glsi-ChrGlsi07 | 9366125 | 9368595 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi07g0938 | 136 | 254 | Core DNA Replication Machinery Family | AT4G02110 | 55.462 | 5.20e-32 | 124 |