Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0905 ATGGCTTTCACTGGAACTCTTGATAAATGCAAGGCTTGTGATAAGACTGTTCATGTGGTTGATATGATGACTCTTGAAGGTACACCTTACCATAAATCCTGCTTCAAATGCAGCCACTGCAAGGGGTTTCTTTCGATGAGCAGCTACTCCTGGATGGATGGCATCCTCTATTGCAAAACACATTTTGAGCAGCTTTTCAAGGAATCTGGCAATTTCAGTAAGAACTTTCAGACAGGAAAGTCTTCTGAGAGACAAAATGATCTGTCCAGGACTTCTAGCAAACTCTCTTCCATGTTCAGTGGAACCCAAGACAAATGTTCAGTTTGCTCGAAAACAGTCTATCCTCTGGAAAAGATGACACTGGAAGGAGAGTGCTACCACAAAACTTGCTTTAGATGTGCTCATGCTGGGTGCCCACTCACACATTCCAACTATGCTGCTCTTGATGGTGTCCTCTACTGCAGAGTCCATTTTGGTCAACTCTTCATGGAGAAAGGAAACTATAGCCATGTACTCCAGGGTGCTGTTCACAAAAGGACTGCTTCTACACCTCCTGAATCATCAGCTGAAGATGAGGAGCCAGAGCCAAAGCCAGAAGAACCTGAGGACCAGACAGAAGACAAGTCTTAG 630 0.446 MAFTGTLDKCKACDKTVHVVDMMTLEGTPYHKSCFKCSHCKGFLSMSSYSWMDGILYCKTHFEQLFKESGNFSKNFQTGKSSERQNDLSRTSSKLSSMFSGTQDKCSVCSKTVYPLEKMTLEGECYHKTCFRCAHAGCPLTHSNYAALDGVLYCRVHFGQLFMEKGNYSHVLQGAVHKRTASTPPESSAEDEEPEPKPEEPEDQTEDKS 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0905 209 MobiDBLite consensus disorder prediction 175 209 - -
Glsi07g0905 209 FunFam LIM domain and actin-binding 1 100 170 - -
Glsi07g0905 209 Pfam LIM domain 106 160 IPR001781 -
Glsi07g0905 209 Pfam LIM domain 10 65 IPR001781 -
Glsi07g0905 209 MobiDBLite consensus disorder prediction 76 96 - -
Glsi07g0905 209 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Glsi07g0905 209 SMART lim_4 105 157 IPR001781 -
Glsi07g0905 209 SMART lim_4 9 61 IPR001781 -
Glsi07g0905 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Glsi07g0905 209 Gene3D Cysteine Rich Protein 100 170 - -
Glsi07g0905 209 FunFam LIM domain and actin-binding 1 4 74 - -
Glsi07g0905 209 PANTHER OS06G0237300 PROTEIN 82 200 - -
Glsi07g0905 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 132 171 - -
Glsi07g0905 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 98 131 - -
Glsi07g0905 209 Gene3D Cysteine Rich Protein 5 72 - -
Glsi07g0905 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 2 35 - -
Glsi07g0905 209 ProSiteProfiles LIM domain profile. 104 164 IPR001781 -
Glsi07g0905 209 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0905 Glsi-ChrGlsi07 8664392 8667237 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Glsi07g0905 LIM 2.1e-09 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi07g0905 07 8664392 8667237 Glsi07g0905 07 8664392 8667237 ECH