LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi07g0903	ATGGGACGGACACCTTGTTGCGATAAGAGGGGTTTGAAGAAAGGGCCATGGACAGCTGAAGAGGATGAGATTCTTGTTGATTATATCAAGAAAAATGGTGGCCATGGAAGCTGGCGTTCTCTCCCTAAGTTGGCAGGTCTGCTTCGTTGCGGAAAGAGTTGTCGTCTAAGGTGGACGAACTATCTAAGGCCCGATATAAAACGAGGCCCCTTTACGCTTGAGGAAGAGAAGCTTGTCATGCAGCTTCATGGCATCCTTGGAAACCGGTACTTACTTGAGCTTTCTTCCATTTTTCCTTCAGTTGGAGAAGTTTTAGCTGCCAGAGCACTCTTAGGAGTGAGTATAATGTGGGCTGCTATAGCCTCTCAATTACCAGGGAGAACAGACAATGAGGTAAAGAACTTATGGAACACCCACTTGAAAAAGCGACTTGTATGCATGGGACTTGACCCACTAACCCACAAGCCAGTGACTTCAAATTGCCCTAATAACAAAGCAGCAGAGGCATCTGTTTCTACTCGTCACATGGCCCAATGGGAGAGCGCGAGGCTTGAAGCCGAGGCTAGGCTTTCTAGAGAGTCATCCCTTTTCAATCCCTCCATTATTGTCGCCAAACCCGATGACGACTCCGACCATTTCCTCCGCTTGTGGAACTCTGAAGTCGGAGATGCCTTTCGCAAGATGGTGCAGAAACCAGACGACAATGCTGCCACGTGTCAGAACCCCATTAATTCTCCTTCAGGATCATCATCTTCTACCAAGTGTGGTTCAATTATCTCTGCCGTTACAGCAGAAAATGCACCGTGCCCTCCTTTAGGATCATCCTCGGCCACTGCTGCAAGCAATTTGAACGAAGGTGCAGTGGGTGGGTCTGACGATTCTTCAGGCTCTGATAATGGCTTAGAAGACTCTTCAGACTCTGCATTGCAACTCTTGTTGGATTTTCCCATGTACAACGACATGAGCTTCTTAGAAGGAAACTCTTTTATTTGTCCTCACTAG	1002	0.475	MGRTPCCDKRGLKKGPWTAEEDEILVDYIKKNGGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRGPFTLEEEKLVMQLHGILGNRYLLELSSIFPSVGEVLAARALLGVSIMWAAIASQLPGRTDNEVKNLWNTHLKKRLVCMGLDPLTHKPVTSNCPNNKAAEASVSTRHMAQWESARLEAEARLSRESSLFNPSIIVAKPDDDSDHFLRLWNSEVGDAFRKMVQKPDDNAATCQNPINSPSGSSSSTKCGSIISAVTAENAPCPPLGSSSATAASNLNEGAVGGSDDSSGSDNGLEDSSDSALQLLLDFPMYNDMSFLEGNSFICPH	333

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi07g0903	333	ProSiteProfiles	Myb-like domain profile.	9	62	IPR001005	-
	Glsi07g0903	333	Pfam	Myb-like DNA-binding domain	14	62	IPR001005	-
	Glsi07g0903	333	Pfam	Myb-like DNA-binding domain	68	140	IPR001005	-
	Glsi07g0903	333	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	117	144	IPR017930	-
	Glsi07g0903	333	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR	1	254	-	-
	Glsi07g0903	333	MobiDBLite	consensus disorder prediction	233	254	-	-
	Glsi07g0903	333	Gene3D	-	11	68	-	-
	Glsi07g0903	333	SUPERFAMILY	Homeodomain-like	116	146	IPR009057	-
	Glsi07g0903	333	Gene3D	-	70	144	-	-
	Glsi07g0903	333	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	66	IPR017930	-
	Glsi07g0903	333	CDD	SANT	16	62	IPR001005	-
	Glsi07g0903	333	ProSiteProfiles	Myb-like domain profile.	63	140	IPR001005	-
	Glsi07g0903	333	SUPERFAMILY	Homeodomain-like	15	90	IPR009057	-
	Glsi07g0903	333	MobiDBLite	consensus disorder prediction	234	254	-	-
	Glsi07g0903	333	CDD	SANT	70	140	IPR001005	-
	Glsi07g0903	333	MobiDBLite	consensus disorder prediction	270	303	-	-
	Glsi07g0903	333	SMART	sant	13	64	IPR001005	-
	Glsi07g0903	333	SMART	sant	67	142	IPR001005	-
	Glsi07g0903	333	FunFam	Myb transcription factor	11	68	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi07g0903	Glsi-ChrGlsi07	8630459	8633673	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi07g0903	1	327	MYB Transcription Factor Family	AT3G61250	57.622	7.55e-120	345

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Glsi07g0903		Myb_DNA-binding	1e-08	CL0123