Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0893 ATGAACAATAGAGGAAGATACCCACCTGGGATCGGCGTTGGCCGAGGGGGAGGTGTGAACTCGAACCCTGCGTTTCAGCCGAGGCCCCCTCATCAACAGTACGTGCAGAGGCATTTGGTGCAGCATCAGCAGCAGTACCAACAGCATCAACAGCAGTATCAGCAGCATCAACAACAACAACAACAACAACAACAACAACAACAACAACAACACCATCAACAACAACAATGGTTGAGAAGGACGCAGTTGGGTGCTGCTGATTCCAACGTGGTTGACGAGGTCGAGAAGACTGTCCAGTCTGAAGCCGTTGACCCAAGTTCTCAAGATTGGAAGGCGAGACTAAAGATACCACCACCTGATACACGCTATAGGACAGAGGATGTGACAGCAACTAAAGGAAATGAATTTGAGGACTATTTTTTGAAGCGTGAGCTGCTTATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCTATTCAGGAAGAAAGTATACCTATTGCTCTTACTGGCAGTGACATTCTTGCTAGAGCTAAAAATGGAACTGGAAAAACAGCTGCCTTTTGCATTCCTGCGCTGGAAAAAATTGATCAGGATAACAATGTTATTCAAGTTGTTATACTGGTCCCAACACGAGAGTTGGCTTTGCAAACATCTCAAGTGTGTAAAGAGCTGGGAAAACATTTGCAAATTCAAGTTATGGTTACAACAGGGGGTACCAGCCTGAAGGATGATATCATGCGTTTATATCAACCGGTTCATTTACTAGTTGGAACACCAGGACGAATATTAGATCTTGCAAAGAAGGGGGTCTGCGTTCTGAAAGATTGCACTATGCTTGTTATGGATGAGGCTGATAAGCTTCTGTCCCCAGAGTTCCAGCCTTCAATAGAGCAGCTGATTCATTTCCTGCCTCCAAATCGTCAAATTCTTATGTATTCAGCCACATTTCCTGTTACTGTTAAGGACTTTAAAGATAGATATCTTCATAAAACATATGTGATTAACCTTATGGATGAGCTGACTCTGAAAGGTATTACACAATATTATGCATTTGTGGAAGAGAGACAGAAAGTCCACTGCTTGAATACTCTTTTCTCGAAGCTGCAAATAAACCAGTCAATTATTTTCTGCAACTCCGTGAATCGAGTTGAACTCCTTGCCAAGAAAATAACAGAACTTGGGTATTCATGTTTCTACATTCATGCGAAGATGTTGCAAGATCATCGTAATAGAGTATTTCATGATTTCCGCAATGGCGCATGTAGGAATCTTGTTTGTACTGATCTCTTTACTAGGGGAATAGACATTCAAGCAGTCAATGTTGTCATAAATTTTGATTTTCCCAAGAACTCAGAAACTTATTTGCACAGGGTTGGTCGTTCAGGAAGGTTTGGGCATCTTGGTTTAGCTGTGAACTTGATCACTTATGAGGACCGATTTAATTTATATAGGATTGAACAAGAACTTGGCACTGAAATAAAGCAAATTCCACCGCACATTGATCAAGCAATTTATTGCCGGTGA 1527 0.4185 MNNRGRYPPGIGVGRGGGVNSNPAFQPRPPHQQYVQRHLVQHQQQYQQHQQQYQQHQQQQQQQQQQQQQQHHQQQQWLRRTQLGAADSNVVDEVEKTVQSEAVDPSSQDWKARLKIPPPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCTMLVMDEADKLLSPEFQPSIEQLIHFLPPNRQILMYSATFPVTVKDFKDRYLHKTYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0893 508 FunFam ATP-dependent RNA helicase DDX6 115 338 - -
Glsi07g0893 508 Gene3D - 339 508 IPR027417 -
Glsi07g0893 508 Pfam Helicase conserved C-terminal domain 360 466 IPR001650 -
Glsi07g0893 508 MobiDBLite consensus disorder prediction 1 52 - -
Glsi07g0893 508 Pfam DEAD/DEAH box helicase 159 323 IPR011545 GO:0003676|GO:0005524
Glsi07g0893 508 CDD DEADc_DDX6 136 336 - -
Glsi07g0893 508 Coils Coil 39 66 - -
Glsi07g0893 508 MobiDBLite consensus disorder prediction 94 125 - -
Glsi07g0893 508 SMART ultradead3 153 349 IPR014001 -
Glsi07g0893 508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 488 IPR027417 -
Glsi07g0893 508 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 134 162 IPR014014 GO:0003724
Glsi07g0893 508 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 56 507 - -
Glsi07g0893 508 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 281 289 IPR000629 -
Glsi07g0893 508 Gene3D - 120 338 IPR027417 -
Glsi07g0893 508 FunFam ATP-dependent RNA helicase DDX6 339 508 - -
Glsi07g0893 508 SMART helicmild6 385 466 IPR001650 -
Glsi07g0893 508 MobiDBLite consensus disorder prediction 36 52 - -
Glsi07g0893 508 CDD SF2_C_DEAD 346 475 - -
Glsi07g0893 508 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 345 505 IPR001650 -
Glsi07g0893 508 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 165 335 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0893 Glsi-ChrGlsi07 8409347 8414765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0893 134 505 Eukaryotic Initiation Factors Gene Family AT3G19760 37.701 1.48e-93 288