Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0883 ATGGATCGAGGGGACCATATGGCGTTATCTGGGTCTGCATCTTACTATATGCAGAGAGGGCTAGCTGGTTCTGGAGCACAACCTGAGTTACATGGTTCACCTACTATTCGCCCACTGTCTAATCCCAATCTACCATTTCAAACCAGCATTGGAAGTGGTACCATTGGATCCACATTACCATTAGAATCTTCAGCAATTTCACCCCATGGTGTCAATGTTGGTGCTCCTCCGGGGGCGCATCCGGGTGAACCTGTCAAAAGAAAGAGAGGAAGGCCTAGGAAATATGGTCCAGATGGAAGTGTATCGCTGGCATTGACTCCATCGTCGTCTAGTCATCCTGGAACCTTGACACAAAGCCAGAAGCGGGGTAGAGGGCGCCCACCAGGAACTGGGAAGAAACAGCAGTTGGCTTCTCTTGGTGAATTGATGTCTGGTTCAGCTGGAATGGGTTTCACTCCTCATATCATCACCATTGCAGTTGGAGAAGACATTGCAACAAAAATAATGGCATTTTCTCAGCAAGGGCCTAGAGCTGTATGCATTTTGTCAGCCACTGGTGCTGTCTCTAATGTGACACTTCGGCAGTCTTCAGCTTCGGGTGGCACTGTCACATATGAGGGGCGCTTTGAGATATTATGCTTATCAGGCTCACTCTTGCTAAGTGATAGTAGTGGCTCTCGCAATCGATCTGGTGGACTTAGTGTTTCCCTTGCTAGTCCTAATGGCCGGGTCATCGGTGGAGGGGTTGCCGGATTGCTTATTGCAGCCACTCCTATACAGGTGATAGTTGGAAGCTTTCTATGGGGTGGATCAAAGACAAAGAAAAAGAACAAGGAAGGAGCAGAAGCAGCAGATCATGTTCCTATGGAGTCAGATCATCATCATCATCATCAAGCAGTTCATAGCCCAGCTGCTGCCATGAACAGCATTTCACTGAACCAAAATCTCAGTCCAGCTCCTTCTATGAGTCCGTGGACTGCATCGCGACCGTTGGACATGCGTAATTCCCATGTTGACATCGATTTAATGCGCGGGTGA 1038 0.4855 MDRGDHMALSGSASYYMQRGLAGSGAQPELHGSPTIRPLSNPNLPFQTSIGSGTIGSTLPLESSAISPHGVNVGAPPGAHPGEPVKRKRGRPRKYGPDGSVSLALTPSSSSHPGTLTQSQKRGRGRPPGTGKKQQLASLGELMSGSAGMGFTPHIITIAVGEDIATKIMAFSQQGPRAVCILSATGAVSNVTLRQSSASGGTVTYEGRFEILCLSGSLLLSDSSGSRNRSGGLSVSLASPNGRVIGGGVAGLLIAATPIQVIVGSFLWGGSKTKKKNKEGAEAADHVPMESDHHHHHQAVHSPAAAMNSISLNQNLSPAPSMSPWTASRPLDMRNSHVDIDLMRG 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0883 345 Gene3D - 153 294 - -
Glsi07g0883 345 SMART AT_hook_2 121 133 IPR017956 GO:0003677
Glsi07g0883 345 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Glsi07g0883 345 ProSiteProfiles PPC domain profile profile. 147 287 IPR005175 -
Glsi07g0883 345 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 69 314 IPR039605 GO:0003680
Glsi07g0883 345 MobiDBLite consensus disorder prediction 102 124 - -
Glsi07g0883 345 MobiDBLite consensus disorder prediction 34 65 - -
Glsi07g0883 345 Pfam Plants and Prokaryotes Conserved (PCC) domain 153 266 IPR005175 -
Glsi07g0883 345 SUPERFAMILY AF0104/ALDC/Ptd012-like 151 273 - -
Glsi07g0883 345 MobiDBLite consensus disorder prediction 274 299 - -
Glsi07g0883 345 CDD DUF296 152 266 IPR005175 -
Glsi07g0883 345 MobiDBLite consensus disorder prediction 274 302 - -
Glsi07g0883 345 MobiDBLite consensus disorder prediction 20 135 - -
Glsi07g0883 345 FunFam AT-hook motif nuclear-localized protein 1-like 153 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0883 Glsi-ChrGlsi07 8291829 8297858 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0883 1 345 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 48.209 3.51e-86 262