Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0882 ATGGGGATTCAGTGCTCTACGCTCATGCCATGTTGTGTGAATTCACAAGTCAAGGCATCTGCTCTTGAAGCTCCAGATGCCGTAAATGAGGATACAAGTGAGACCAATAACTGGCCTGCATTCCGTGAATTTACATTTGAGCGACTTAAGAATGCAACATCTGGCTTTGCTGTGGAGAATATTGTATCTGAACATGGGGAGAAGGCTCCCAATGTTGTTTATAAAGGGAAGCTGGAGAATCAAATGAGGATTGCTGTTAAGCGGTTTAACAGAAATGCTTGGCCTGATGCTCGGCAATTTCTGGAGGAAGCAAGATTAGTTGGTCAGCTCCGTAACCAAAGACTGGCAAATTTACTTGGTTGTTGTTGTGAAGGTGATGAGAGGTTGCTTGTGGCAGAATATATGCCAAATGAAACACTCGCCAAGCACCTTTTCCATTGGGAAACACAACCTATGAAATGGGCAATGCGACTAAGAGTTGTTCTATATATTGCACAAGCTCTAGAATACTGCACAAGCAAAGGGCGTGCCCTTTATCATGACCTTAATGCATATAGGGTTCTTTTTGATGAGGATGGTAATCCTAGGCTTTCAAGTTTTGGCCTTATGAAGAATAGTAGGGATGGGAAAAGTTATAGCACAAATTTGGCATTTACCCCTCCAGAGTATCTGAGAACTGGAAGAGTAACACCAGAAAGTGTAATATATAGCTTTGGCACTCTTTTGCTTGATCTTCTCAGTGGGAAGCATATCCCCCCAAGCCACGCCCTTGATTTGATTCGGGACAGAAATCTTCAGATGCTGACAGACTCTTGTTTAGAAGGACAGTTTTCTGATGATGATGGAACTGAGTTGGTACGCTTGGCTTCTCGATGTTTACAGTATGAAGCCAGGGAACGGCCAAATCCAAAGTCATTGGTGGCTGCTTTGGCTCCTCTTCAGAAAGAAACAGAGGTTCCTTCACATGTCTTGATGGGTGTCCCACACAGTGCTACTTTCGCTGCATTGTCCCCACTTGGTGAAGCATGCTCAAGAAAAGACTTGACTTTCTTGCATGAAGTTCTGGAAAATATTGGCTATAAAGATGATGAAGGAGTGACAAATGAGTTATCGTTCCAGATGTGGACCGATCAAATGCAGGACACACTAAATTGTAAGAAAAAGGGCGATGTTGCTTTCCGGCAGAAAGATTTTAGACTTGCCATTGAATGCTACTCACAGTTCATTGATGCTGGAACAATGGTTTCTCCGACAGTCTATGCACGGCGCAGTTTGTCTTATCTCATCAGTGACATACCTCAGGAAGCGCTGAACGATGCAATGCAAGCACAAGTCATTTCCCCAGTATGGCACATTGCATCTTATCTTCAATCTGTTGCGCTTGCTGGAATTGGGATGCAGAATGAAGCCCAAGTTGCACTTAAAGAGGGCACAACGCAGGAAGCGAAGCGAAATACAGCTGCCGGACAAAAATGA 1476 0.4397 MGIQCSTLMPCCVNSQVKASALEAPDAVNEDTSETNNWPAFREFTFERLKNATSGFAVENIVSEHGEKAPNVVYKGKLENQMRIAVKRFNRNAWPDARQFLEEARLVGQLRNQRLANLLGCCCEGDERLLVAEYMPNETLAKHLFHWETQPMKWAMRLRVVLYIAQALEYCTSKGRALYHDLNAYRVLFDEDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVIYSFGTLLLDLLSGKHIPPSHALDLIRDRNLQMLTDSCLEGQFSDDDGTELVRLASRCLQYEARERPNPKSLVAALAPLQKETEVPSHVLMGVPHSATFAALSPLGEACSRKDLTFLHEVLENIGYKDDEGVTNELSFQMWTDQMQDTLNCKKKGDVAFRQKDFRLAIECYSQFIDAGTMVSPTVYARRSLSYLISDIPQEALNDAMQAQVISPVWHIASYLQSVALAGIGMQNEAQVALKEGTTQEAKRNTAAGQK 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0882 491 SUPERFAMILY Protein kinase-like (PK-like) 35 319 IPR011009 -
Glsi07g0882 491 Gene3D Tetratricopeptide repeat domain 380 490 IPR011990 GO:0005515
Glsi07g0882 491 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 19 485 IPR045845 GO:0004672|GO:0009742
Glsi07g0882 491 ProSiteProfiles Protein kinase domain profile. 59 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi07g0882 491 Gene3D Transferase(Phosphotransferase) domain 1 136 328 - -
Glsi07g0882 491 FunFam probable serine/threonine-protein kinase At4g35230 380 489 - -
Glsi07g0882 491 Gene3D Phosphorylase Kinase; domain 1 29 134 - -
Glsi07g0882 491 FunFam probable serine/threonine-protein kinase At5g41260 136 327 - -
Glsi07g0882 491 Pfam Protein tyrosine and serine/threonine kinase 72 309 IPR001245 GO:0004672|GO:0006468
Glsi07g0882 491 SUPERFAMILY TPR-like 381 477 IPR011990 GO:0005515
Glsi07g0882 491 FunFam probable serine/threonine-protein kinase At4g35230 31 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0882 Glsi-ChrGlsi07 8245492 8249902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0882 10 313 Glycoside Hydrolase AT3G07070 34.639 2.20e-45 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Glsi07g0882 PK_Tyr_Ser-Thr 4.1e-28 CL0016