LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi07g0859	ATGGCCGTGGTAGGAAGGGGAGAAGTTGTCGAGGAGCCTAATTCAGGTGTGGTTGAAGAGAAAATCTATGTTGCTGTTTCCAAAGATGTGAAAGATAGCAAATTAAATCTGATATGGGCGATACAGAATTCAGGAGGAAGGAAGATTTGCATCCTTCACGTTCATGTGCCTGCAACAATGATCCCCTTGATGGGTACTAAGTTTGCAGCAAGTTCACTGAATAAGGAGGAAGTTGAAGCATACAGGGAAATCGAAAGGCAAAATATGCATGAAACTCTGAATGAGTATCTTCTAATTTGTCAACGGATGGGGGTGCGAGCAGAAAAACTGCACATTGAAAATGATTGCATTGAAAAAGGAATTGTAGAACTTGTGTCCCAGTGTAGCATCCGGAAGCTTGTTATGGGAGCAGCATCTGATAAGTACTATTCTAGGAGAATGATGGACCTGAGATCTAAGAAAGCTATCTATGTACGTGAACAAGCTTCAGCTTCTTGTCACATACAATTTATATGCAAAGGACACCTTATACACACAAGGGACTGCAGTTTGGATATAGGTAATGTAGAGGTTGCATCTCCTTTGCTGCAGCAAGGGCCAAGCCCTGAAGCTGGACGTTCACTCCACTTGAGATCACAATCTATTGCGCTTGGGCAGCAACGGCTAAACCCTGAAGCTGGACATTCACTCCACTTGAGATCACAAACTATTGCACTTGGGCAGAATCATCGACTAAAACTCACAAATCCAGCTCAAGATCTATTTCACAAAGTAAGGTCCGCCAATGTTGGACGTGGAGGGAGAATAACAACTGTTTCTTCTCCAGATGACACTGAAGGACTTTCAACTCCACGTAACAGGTTGGGTACGGAAGGAAGTTCTGACGAGTCAGAAGGGCTGTCAAGAAGGAGTCCTTCAGTTTTATCAACCTGCTCTGATAGTGGTGCAGTTGAAGCAGCGTTGACCCCAGATTTGATCACTGAGCGGAGTGATAATGTATTAGACTTGAGTCGACTTTCTATGAATAAAGCAGATCTTTGTCATTCATCTCCTCCCAGCGTACTGGATGGAGGAATGGACTATACTCTTTATGATCAACTTGAACAGGCCATGGCTGAGGCTGAGAATGCTAGGTGGGATGCGTACCAAGAAAATGTTAGCCGTAGGAAATCTGAAAAAGATGCCATTGATGCTATATTCAAGGCTAAAGCTTCTGAAAGCTTATATACAGAGGAGTTGAAACTGAGGAAAGAGGTAGAGGAAGCACTAGAAAAAGAAAAAGAAGATCTTGGACAGATGAGGAGTCAGAGAGATAAAGTAAAGGAACAACTCCAACTCGCCTTGGATCAGAAGTCATCACTAGAGAGTCAAATTGCATCATCAGAAGTTATGGTAAAGGAGTTGGAGCAGAAGATTATATCTGCTGTGGATCTGTTACAAAGTTACAAGAAAGAACGAGATGAGTTGCAGGTGCAACGTGATAATGCTTTGAGAGAGGCTGAGGAGTTGAGAAAAAAACCAGGAGAGGCCTCAAGCACACATGTGCCTCAATTTTTCTTAGAGTTCTCTTTTCTAGAGATTGAAGAAGCATCAAATAACTTCAATCCATCCCTAAAGATTGGAGAAGGTGGATATGGAAGTATATATAAAGGTATCCTACGTCACACTGAGGTGGCTATCAAAATGCTGCACCCTGACAGCTTGCAAGGACCTTCGGAGTTTCAACAGGAGGTTGATGTATTGAGTAAGTTAAGGCATCCCAATCTTATTACATTCATAGGAGCCTGTCCGGAGTCCTGGACTCTTGTCTATGAGTATTTACCCAACGGAAGCCTTGAAGATCGGCTCAGCTGCAAGGATAACACACCTCCGTTATCATGGCAAACTCGAATTCGCATTGCTGCAGAGCTCTGCTCTGCTCTCATCTTTCTTCATTCCAGTAAACCTCACAGCATAGTGCATGGTGACTTAAAACCCTCCAATATTCTCCTTGACACAAACCTAGTTAGCAAGCTTAGCGACTTTGGAATTTGTCGTATACTATCTTGTCTTGAGAGTTCAAGTAGCAACACCACAGAGTGTTGGAGAACTGACCCAAAGGGCACTTTTGTCTACATGGATCCTGAATTCATTGCTTCAGGGGAACTTACTCCAAAGTCAGATATATATTCATTTGGAATCATATTATTAAGACTGTTGACTGGGAGACCAGCCTTGGGAATAACAAAGGAAGTGCAATATGCATTAGATGCTGGAAAGTTGAAATCCCTCTTAGATCCTTTGGCTGGAGACTGGCCATTCGTGCAGGCTGAACAGTTAGCTCGCTTGGCATTGAGGTGTTGTGAGATGAAGAGAAAGAACCGGCCAGACCTTTATTCAGATGTCTGGAGGATGCTGGAACCAATGAGGGCTTCTTCCGGAGGCGCAAATGCCTTCAGAGTGGGTTCTGAAGTGTTTTATCAACCTCCTTCATATTTCATTTGTCCCATCTTCCAGGAAGTCATGCAAGATCCGCATGTGGCTGCAGACGGTTTTACTTACGAAGCCGAGGCTATACGAGGATGGCTGGACAGTGGTCATGAGACATCACCAATGACAAATTCTAAACTTGCACATAGCAATCTTGTCCCGAACCATGCTCTTCGCTCTGCAATCCAGGACTGGCTTCAAAATCAATGA	2679	0.4364	MAVVGRGEVVEEPNSGVVEEKIYVAVSKDVKDSKLNLIWAIQNSGGRKICILHVHVPATMIPLMGTKFAASSLNKEEVEAYREIERQNMHETLNEYLLICQRMGVRAEKLHIENDCIEKGIVELVSQCSIRKLVMGAASDKYYSRRMMDLRSKKAIYVREQASASCHIQFICKGHLIHTRDCSLDIGNVEVASPLLQQGPSPEAGRSLHLRSQSIALGQQRLNPEAGHSLHLRSQTIALGQNHRLKLTNPAQDLFHKVRSANVGRGGRITTVSSPDDTEGLSTPRNRLGTEGSSDESEGLSRRSPSVLSTCSDSGAVEAALTPDLITERSDNVLDLSRLSMNKADLCHSSPPSVLDGGMDYTLYDQLEQAMAEAENARWDAYQENVSRRKSEKDAIDAIFKAKASESLYTEELKLRKEVEEALEKEKEDLGQMRSQRDKVKEQLQLALDQKSSLESQIASSEVMVKELEQKIISAVDLLQSYKKERDELQVQRDNALREAEELRKKPGEASSTHVPQFFLEFSFLEIEEASNNFNPSLKIGEGGYGSIYKGILRHTEVAIKMLHPDSLQGPSEFQQEVDVLSKLRHPNLITFIGACPESWTLVYEYLPNGSLEDRLSCKDNTPPLSWQTRIRIAAELCSALIFLHSSKPHSIVHGDLKPSNILLDTNLVSKLSDFGICRILSCLESSSSNTTECWRTDPKGTFVYMDPEFIASGELTPKSDIYSFGIILLRLLTGRPALGITKEVQYALDAGKLKSLLDPLAGDWPFVQAEQLARLALRCCEMKRKNRPDLYSDVWRMLEPMRASSGGANAFRVGSEVFYQPPSYFICPIFQEVMQDPHVAADGFTYEAEAIRGWLDSGHETSPMTNSKLAHSNLVPNHALRSAIQDWLQNQ	892

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi07g0859	892	ProSiteProfiles	Protein kinase domain profile.	534	803	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi07g0859	892	SUPERFAMILY	RING/U-box	816	890	-	-
	Glsi07g0859	892	SMART	Ubox_2	825	888	IPR003613	GO:0004842\|GO:0016567
	Glsi07g0859	892	SUPERFAMILY	Protein kinase-like (PK-like)	511	800	IPR011009	-
	Glsi07g0859	892	Pfam	Protein kinase domain	538	789	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi07g0859	892	Gene3D	Phosphorylase Kinase; domain 1	512	606	-	-
	Glsi07g0859	892	CDD	STK_N	21	174	-	-
	Glsi07g0859	892	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	652	664	IPR008271	GO:0004672\|GO:0006468
	Glsi07g0859	892	ProSitePatterns	Protein kinases ATP-binding region signature.	540	561	IPR017441	GO:0005524
	Glsi07g0859	892	Coils	Coil	364	384	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi07g0859	Glsi-ChrGlsi07	8012632	8018001	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi07g0859	358	892	U-box Gene Family	AT2G45910	64.860	0.0	733

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Glsi07g0859		Pkinase	1.5e-42	CL0016

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