Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0859 ATGGCCGTGGTAGGAAGGGGAGAAGTTGTCGAGGAGCCTAATTCAGGTGTGGTTGAAGAGAAAATCTATGTTGCTGTTTCCAAAGATGTGAAAGATAGCAAATTAAATCTGATATGGGCGATACAGAATTCAGGAGGAAGGAAGATTTGCATCCTTCACGTTCATGTGCCTGCAACAATGATCCCCTTGATGGGTACTAAGTTTGCAGCAAGTTCACTGAATAAGGAGGAAGTTGAAGCATACAGGGAAATCGAAAGGCAAAATATGCATGAAACTCTGAATGAGTATCTTCTAATTTGTCAACGGATGGGGGTGCGAGCAGAAAAACTGCACATTGAAAATGATTGCATTGAAAAAGGAATTGTAGAACTTGTGTCCCAGTGTAGCATCCGGAAGCTTGTTATGGGAGCAGCATCTGATAAGTACTATTCTAGGAGAATGATGGACCTGAGATCTAAGAAAGCTATCTATGTACGTGAACAAGCTTCAGCTTCTTGTCACATACAATTTATATGCAAAGGACACCTTATACACACAAGGGACTGCAGTTTGGATATAGGTAATGTAGAGGTTGCATCTCCTTTGCTGCAGCAAGGGCCAAGCCCTGAAGCTGGACGTTCACTCCACTTGAGATCACAATCTATTGCGCTTGGGCAGCAACGGCTAAACCCTGAAGCTGGACATTCACTCCACTTGAGATCACAAACTATTGCACTTGGGCAGAATCATCGACTAAAACTCACAAATCCAGCTCAAGATCTATTTCACAAAGTAAGGTCCGCCAATGTTGGACGTGGAGGGAGAATAACAACTGTTTCTTCTCCAGATGACACTGAAGGACTTTCAACTCCACGTAACAGGTTGGGTACGGAAGGAAGTTCTGACGAGTCAGAAGGGCTGTCAAGAAGGAGTCCTTCAGTTTTATCAACCTGCTCTGATAGTGGTGCAGTTGAAGCAGCGTTGACCCCAGATTTGATCACTGAGCGGAGTGATAATGTATTAGACTTGAGTCGACTTTCTATGAATAAAGCAGATCTTTGTCATTCATCTCCTCCCAGCGTACTGGATGGAGGAATGGACTATACTCTTTATGATCAACTTGAACAGGCCATGGCTGAGGCTGAGAATGCTAGGTGGGATGCGTACCAAGAAAATGTTAGCCGTAGGAAATCTGAAAAAGATGCCATTGATGCTATATTCAAGGCTAAAGCTTCTGAAAGCTTATATACAGAGGAGTTGAAACTGAGGAAAGAGGTAGAGGAAGCACTAGAAAAAGAAAAAGAAGATCTTGGACAGATGAGGAGTCAGAGAGATAAAGTAAAGGAACAACTCCAACTCGCCTTGGATCAGAAGTCATCACTAGAGAGTCAAATTGCATCATCAGAAGTTATGGTAAAGGAGTTGGAGCAGAAGATTATATCTGCTGTGGATCTGTTACAAAGTTACAAGAAAGAACGAGATGAGTTGCAGGTGCAACGTGATAATGCTTTGAGAGAGGCTGAGGAGTTGAGAAAAAAACCAGGAGAGGCCTCAAGCACACATGTGCCTCAATTTTTCTTAGAGTTCTCTTTTCTAGAGATTGAAGAAGCATCAAATAACTTCAATCCATCCCTAAAGATTGGAGAAGGTGGATATGGAAGTATATATAAAGGTATCCTACGTCACACTGAGGTGGCTATCAAAATGCTGCACCCTGACAGCTTGCAAGGACCTTCGGAGTTTCAACAGGAGGTTGATGTATTGAGTAAGTTAAGGCATCCCAATCTTATTACATTCATAGGAGCCTGTCCGGAGTCCTGGACTCTTGTCTATGAGTATTTACCCAACGGAAGCCTTGAAGATCGGCTCAGCTGCAAGGATAACACACCTCCGTTATCATGGCAAACTCGAATTCGCATTGCTGCAGAGCTCTGCTCTGCTCTCATCTTTCTTCATTCCAGTAAACCTCACAGCATAGTGCATGGTGACTTAAAACCCTCCAATATTCTCCTTGACACAAACCTAGTTAGCAAGCTTAGCGACTTTGGAATTTGTCGTATACTATCTTGTCTTGAGAGTTCAAGTAGCAACACCACAGAGTGTTGGAGAACTGACCCAAAGGGCACTTTTGTCTACATGGATCCTGAATTCATTGCTTCAGGGGAACTTACTCCAAAGTCAGATATATATTCATTTGGAATCATATTATTAAGACTGTTGACTGGGAGACCAGCCTTGGGAATAACAAAGGAAGTGCAATATGCATTAGATGCTGGAAAGTTGAAATCCCTCTTAGATCCTTTGGCTGGAGACTGGCCATTCGTGCAGGCTGAACAGTTAGCTCGCTTGGCATTGAGGTGTTGTGAGATGAAGAGAAAGAACCGGCCAGACCTTTATTCAGATGTCTGGAGGATGCTGGAACCAATGAGGGCTTCTTCCGGAGGCGCAAATGCCTTCAGAGTGGGTTCTGAAGTGTTTTATCAACCTCCTTCATATTTCATTTGTCCCATCTTCCAGGAAGTCATGCAAGATCCGCATGTGGCTGCAGACGGTTTTACTTACGAAGCCGAGGCTATACGAGGATGGCTGGACAGTGGTCATGAGACATCACCAATGACAAATTCTAAACTTGCACATAGCAATCTTGTCCCGAACCATGCTCTTCGCTCTGCAATCCAGGACTGGCTTCAAAATCAATGA 2679 0.4364 MAVVGRGEVVEEPNSGVVEEKIYVAVSKDVKDSKLNLIWAIQNSGGRKICILHVHVPATMIPLMGTKFAASSLNKEEVEAYREIERQNMHETLNEYLLICQRMGVRAEKLHIENDCIEKGIVELVSQCSIRKLVMGAASDKYYSRRMMDLRSKKAIYVREQASASCHIQFICKGHLIHTRDCSLDIGNVEVASPLLQQGPSPEAGRSLHLRSQSIALGQQRLNPEAGHSLHLRSQTIALGQNHRLKLTNPAQDLFHKVRSANVGRGGRITTVSSPDDTEGLSTPRNRLGTEGSSDESEGLSRRSPSVLSTCSDSGAVEAALTPDLITERSDNVLDLSRLSMNKADLCHSSPPSVLDGGMDYTLYDQLEQAMAEAENARWDAYQENVSRRKSEKDAIDAIFKAKASESLYTEELKLRKEVEEALEKEKEDLGQMRSQRDKVKEQLQLALDQKSSLESQIASSEVMVKELEQKIISAVDLLQSYKKERDELQVQRDNALREAEELRKKPGEASSTHVPQFFLEFSFLEIEEASNNFNPSLKIGEGGYGSIYKGILRHTEVAIKMLHPDSLQGPSEFQQEVDVLSKLRHPNLITFIGACPESWTLVYEYLPNGSLEDRLSCKDNTPPLSWQTRIRIAAELCSALIFLHSSKPHSIVHGDLKPSNILLDTNLVSKLSDFGICRILSCLESSSSNTTECWRTDPKGTFVYMDPEFIASGELTPKSDIYSFGIILLRLLTGRPALGITKEVQYALDAGKLKSLLDPLAGDWPFVQAEQLARLALRCCEMKRKNRPDLYSDVWRMLEPMRASSGGANAFRVGSEVFYQPPSYFICPIFQEVMQDPHVAADGFTYEAEAIRGWLDSGHETSPMTNSKLAHSNLVPNHALRSAIQDWLQNQ 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0859 892 ProSiteProfiles Protein kinase domain profile. 534 803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi07g0859 892 SUPERFAMILY RING/U-box 816 890 - -
Glsi07g0859 892 SMART Ubox_2 825 888 IPR003613 GO:0004842|GO:0016567
Glsi07g0859 892 SUPERFAMILY Protein kinase-like (PK-like) 511 800 IPR011009 -
Glsi07g0859 892 Pfam Protein kinase domain 538 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi07g0859 892 Gene3D Phosphorylase Kinase; domain 1 512 606 - -
Glsi07g0859 892 CDD STK_N 21 174 - -
Glsi07g0859 892 ProSitePatterns Serine/Threonine protein kinases active-site signature. 652 664 IPR008271 GO:0004672|GO:0006468
Glsi07g0859 892 ProSitePatterns Protein kinases ATP-binding region signature. 540 561 IPR017441 GO:0005524
Glsi07g0859 892 Coils Coil 364 384 - -
Glsi07g0859 892 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 821 892 IPR013083 -
Glsi07g0859 892 ProSiteProfiles U-box domain profile. 821 892 IPR003613 GO:0004842|GO:0016567
Glsi07g0859 892 CDD RING-Ubox_WDSUB1-like 823 878 - -
Glsi07g0859 892 Gene3D Transferase(Phosphotransferase) domain 1 607 812 - -
Glsi07g0859 892 CDD STKc_IRAK 540 802 - -
Glsi07g0859 892 MobiDBLite consensus disorder prediction 266 312 - -
Glsi07g0859 892 Gene3D HUPs 15 139 IPR014729 -
Glsi07g0859 892 Coils Coil 409 506 - -
Glsi07g0859 892 MobiDBLite consensus disorder prediction 265 312 - -
Glsi07g0859 892 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 34 145 - -
Glsi07g0859 892 Pfam U-box domain 823 891 IPR003613 GO:0004842|GO:0016567
Glsi07g0859 892 PANTHER OS02G0152300 PROTEIN 22 887 - -
Glsi07g0859 892 FunFam receptor-like protein kinase FERONIA 498 606 - -
Glsi07g0859 892 SMART serkin_6 534 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0859 Glsi-ChrGlsi07 8012632 8018001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0859 358 892 U-box Gene Family AT2G45910 64.860 0.0 733
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Glsi07g0859 Pkinase 1.5e-42 CL0016