Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0848 ATGCATTTGCAGTCATTGCAACAGCAACTACTTAGAAAACCTGAAGGGAATGAAGCAGTTTTAGCATATCAAGCGGCCCTTCAAGGGGCATTTGGTAGTAACAATTTTTCATCTCCCAGTGCCATGCAATTGCCTCAGCAGTCTCGAAAATTCATTGAATTAGCTCAACATGGTTCCAGCCAGGAGTCCCAGCTCAAGGGTCAAGGCGTTGAGCAGCAAATGCTCAATCCTGTCCATCAAGCATATCTTCATTATGCTCTCCAGGCTGCCCAACAAAAGTCTGCTTTGGCAATGCAGTCTCAGCAGCAAACTAAAATGGGAATGTTAGGCCCTTCATCTGTTAAGGATCAAGAAATGCGTATGGGAAATTTGAAAATGCAGGACCTTATGTCTATGCAGGCAGCAAATCAAGCTCAAGGTTCAACCTCCAGGAGTTTACCTGAACAGTTTGCTCGCGGAGAAAAGCAGATAGAGCAAGGACATCAGCTAGCCCCTGATCAAAAAAGTGAGGGAAAGCCTTCAACCCAGGGCCCATCCATTGGACAGTTAATGCCTGGAAATCCAATAAGACCAGTGCAAGCACCAGCAACTAGGCAGGGCATCCAAAATGTTGGGAACAACCAGATTGCAGTGTCTGCTCAATTGCAGGCTATGCAAGCATGGGCACGTGAGCGTAATATTGATCTATCACATCCTACAAATGCTAGTTTAATGGCACAACTCATTCCAATGATGCAGTCAAGGATGGTTCCACAACAAAAAGCAAATGAGAGCAACATTGGTGCTCAGTCATCTCCTGTCCCTGTTTCAAAGCAGCAGGTTACTTCTCCAGCAGTTGCTAGTGAGAGCTCAGTACATGCTAATTCATCAAGTGACGTGTCTGGGATGTCAGGTTCTGCAAAAGCCAGGCAGACAGTTCCTCCCAGCAATTTTGGCCCGCTAACAAATGCTGTTACAGCCAGTAACTCCAGTGACATGTCAATGCAGCAATTTAATGTTCATGGCAGAGAGTCTCAAGTATCTCTGAGGCAACCGATAGTAGTTGGAAATGGAATGCCTTCTATGCATCCCCAACAGTCTTCTACCAACATGAACTTGGGTGCAGATCATCCTTTGAATGCAAAAAATATATTATCTGGTCCAGAACCTCCGCAAATGCAGTACATGAGGCAGTTAAACCAATCTTCTCCTCAGGCATCAGGTCCTACTAATGAAGGGGGCCCAGGAAATTATGCCAAATCCCAAGGGGCACCGTCTCAAATACCTCAACAACAACATGGATTTACCAAACAACAGCTGCATGTTCTTAAAGCTCAGATACTAGCATTTAGGCGGCTGAAGAAAGGAGAAGGTACTCTCCCCCAAGAACTTCTTCGGGCTATTATTCCGCCACCTCTCGAGTTGCAAGTGCAGCAGTCAATCCATCCTTCAGGAGGACCAAATCAAGATAAATCTGCTGGAAATATTGTGCCAGAGCACTCAAGATGTATAGAGTCTAATGCAAAGGACTCACAACAAATCCCCACAATTAATGGACAGTGTTCTTCAAAGCAGGAATCCCTTGCCAGAGATGAGAAATCCACTGTCACAGCAATTCATATGCAAGCTAAGCCCGCTGTGACAAAGGATCCTGCTACCGTGTTATCTTCTGGAAAGGAAGAGCAGCAATCAGTAGGATGCTCTGTTAAATCAGACCAGGAAAGTGAACGTGAAATTAACAGAAATCCTATTAGAAATGAGATGCCATTAGATAGGGGAAAAGCTATTGCACCACAGTCTTCTGTATCTGACACAATGCAAAATAAGAACCCTGCACAAACTAGCACTGTTGTGCAGGCAAAGGATGTAGGGTCCAACAGAAAGTATCATGGGCCCCTATTTGATTTTCCTTTCTTCACTAGAAAACATGACTCCTTTGGGTCATCAATGATGGTAAGCAGCAACAACAATTTGTTATTGGCATATGATGTCAAAGATCTTCTTTTTGAGGAAGGCGTGGAAGTACTTAGCAAGAAAAGGACAGAAAATTTAAAGAAGATTGAAGGTTTACTGGCAATAAACTTAGAGAGGAAACTAATTAGGCCAGATCTTGTGCTGAGGTTGCAGATTGAAGAGAAAAAGCTTCGTCTTAAAGATCTTCAGGCACGTTTAAGGGATGAGATTGATCAACAGCAACAAGAGATAATGGCAATGCCGGACAGGCCATATCGTAAATTTGTTAGGCTGTGTGAGCGTCAGCGTATAGAACTTTCTAGACAAGTGCAGGCATCTCAGAGAGCTTTAAGGGAGAAGCAACTCAAATCTATATTTCAGTGGCGTAAGAAGCTTCTTGAGGCGCACTGGGCCATTCGTGATGCTCGGACTGCTCGGAACAGAGGTGTGGCCAAATATCATGAGAGAATGTTGAGGGAGTTTTCAAAACGTAAAGATGATGACAGGAACAAAAGGATGGAAGCCTTAAAAAATAATGATGTTGACAGATATAGGGAGATGTTGCTTGAGCAGCAGACTAGCCTTGCAGGTGATGCTGCAGAGAGATATTCTGTTCTCTCATCTTTCTTAACGCAGACAGAAGAGTATCTACATAAATTGGGAGGCAAGATAACAGCTGCCAAGAATCAACAGGAAATGGAGGAGGCAGCAAAAGCTGCTGCAGCTGCTGCTCGGTTGCAGGCATGCTTCATCAAAGAAGTCAGAGCGGCAGCAGCTTGTGCTGGAGAAGAAGTAATGATTAGAAATCATTTTATGGAGATGAATGCTCCTAAAGACAGTTCATCTGTCAGCAAGTATTACAACCTTGCTCATGCTGTCAATGAAAAGGTCATAAGGCAACCATCAATGTTACGGGCTGGAACCTTGAGAGACTATCAGCTTGTTGGCTTGCAATGGATGCTTTCTTTGTATAACAACAAGTTGAATGGAATTTTGGCAGATGAGATGGGCCTTGGCAAAACGGTGCAGGTTATGGCATTGATTGCCTACTTAATGGAATTTAAAGGAAACTACGGCCCACATCTTATTATAGTCCCAAATGCTGTTTTGGTTAACTGGAAGAGTGAGTTTTATAACTGGTTACCATCTGCGTCATGCATTTTTTATGTTGGAGGGAAGGATCAACGATCTAAATTATTTTCTCAAGAAGTTTGTGCTTTGAAATTTAATGTCCTTGTGACAACTTATGAGTTCATCATGTATGACCGGTCCAAGCTTTCAAAAATTGACTGGAAGTATATCATAATTGATGAAGCACAGAGGATGAAGGATAGGGATTCAGTTCTAGCACGTGATCTTGATAGATATCGTTGTCAGAGACGCCTGCTTCTGACAGGAACACCTTTACAGAATGATTTGAAGGAACTCTGGTCACTTTTAAATTTACTCCTTCCTGAGGTTTTCGACAATCGGAAAGCATTTCATGATTGGTTCTCAAAACCTTTTCAGAAGGAAGGTCCTAATCAAAATGCAGAGGATGATTGGCTTGAAACAGAGAAGAAAGTCATAATTATCCATCGACTTCATCAGATTCTTGAGCCATTCATGCTTAGGCGTCGTGTTGAAGATGTTGAAGGCTCGCTACCACCAAAGGTCTCCATAGTTTTGCGATGTAAAATGTCGGCTATTCAGAGTGCCATTTATGACTGGGTCAAATCCACTGGTACTCTTCGTCTTGATCCTGAGGATGAGAAGCTTAGGGTTCAAAAGAATCCAGTCTACCAGGCAAAGCAATATAAAACTTTAAATAACAGATGCATGGAACTGCGTAAAACTTGCAATCATCCATTGCTTAATTACCCATACTTCAGTGACTTATCCAAAGATTTCCTTGTAAAATCTTGCGGGAAACTGTGGATTCTGGATAGAATCCTCATAAAGCTTCAAAGGACTGGACATCGAGTTCTGCTCTTTAGTACCATGACAAAACTCCTAGACATATTGGAAGAATACCTGCAATGGCGACGGCTTTTGTACAGGAGAATTGATGGGACAACTAGTTTAGAAGACCGTGAATCAGCCATAGTGGACTTTAATAGCCCTGATTCAGACTGTTTCATATTCTTGCTTAGTATTCGAGCTGCTGGGCGAGGCCTTAATCTTCAATCTGCTGATACAGTAGTCATATATGATCCTGACCCAAACCCTAAAAATGAGGAGCAGGCAGTTGCCAGAGCTCATCGCATTGGACAGAAAAGAGAAGTCAAAGTTATCTACATGGAAGCTGTTGTTGACAAAATCTCCAGCCATCAGAAAGAGGATGAACTGAGAAGTGGAGGCACTGTCGATTTGGAGGAAGAACTTGCAGGAAAGGATCGCTATATGGGATCCATTGAAAGCCTTATAAGGAACAATATTCAACAGTATAAGATAGACATGGCTGATGAGGTCATTAATGCTGGACGTTTTGACCAAAGAACAACCCATGAAGAGAGACGCTTGACTTTGGAGACATTATTACATGATGAAGAAAGGTATCAAGAAACTCTCCATGATGTTCCCTCACTACAGGAGGTAAATCGCATGATTGCTAGGAGTAAAGAGGAAGTTGAACTGTTTGATCAAATGGATGAAGAGTTGGATTGGACTGAAGATATGACACGGTATGATCAGGTGCCTAAGTGGCTTAGAGTCACTACAAGAGATGTGAATGCCACTATTGCTGCTTTATCAAAAAAACCATCAAAAAACACTTTATTGGGTGGTAATACTGGCATGGAATCCAGTGAAGTGGGTTCTGAAAGGAGAAGGGGCCGACCCAAGGGAAAGAAGCATCTTAATTATAAAGAGTTAGAAGATGAAAATGGAGAATTCTCTGAAGCAAGTTCTGAAGAAAGAAATGGATATTCTGCACATGAAGAAGGGGAAATAGGAGAATCTGAAGATGATGGGTTTAGTGGGGCTGACGGAGCTCAACCCATTGATAAAGATCCACTGGAAGAAGATGGTCCAATTTGTGATGCTGGATATGAATTTCCTCAGTCTACACAAAGTGCTAGAAATAATCTTATGGTTGAAGGAGCCGGTTCCTCAGGATCATCCTCTGACAATCAAAGACTGACACAGACAGTATCTCCTTCAGTTTCCTCTCAGAAATTTGGTTCCCTCTCTGCATTAGCCCTTTCAAAGAGGATTACAGATGAGTTAGAGGAAGGCGAAATTGCAGCATCTGGTGATTCTCCCATGGATAATCAACAGTCTGGAAGTTGGATTCATGATCGTGATGAAGGTGAAGATGAACAAGTTTTGCAACCCAAGATTAAACGTAAACGTAGTCTTCGTGTTCGACCTCGTCATCCCATGGAAAGGCTTGAGGAAAAGTCTGGCAGTGAGGTGGTATCTCTTCACCGTGGAGAATCTCTTTTGGCTGTCCAAGCAGAGCATAAATATCAAGCGCCATCAAGGGCTGACCCAGAAACAAAATCATTTGGAGACTCTAATGCCAGCAGGCATGATCAGAATGAGTTATCATTAAAAAATAAGCGAAGTTTACATTCAAGGAGAGTATCTAATACATCTAAATTACATGGCTCACCTAAGTCTAGTCGATTGAATTGCATTTCTACTCCTTCAGAGGATGGTGAACACTCTAGAGAAAGTTGGGAAGGGAAGCCTATCAATTCAAGTGGGTCTTTGGCTTTTGCCACTAAAATGCCTGAAACCATCCAGAGAAGGTGCAAAAATGTAATTAGCAAGCTCCAAAGGAGAATAGACAAGGAAGGTCATCAAATTGTACCCTTGCTAAAAGATTTGTGGAAAAGGATTGAAAATTCTGGGTACACAGGTGGATCTGGGAATAGTCTGTTGGATTTGCGAAAAATTGACCAGCGAATTGATAGACTGGAGTATAATGGAGTAATGGAGCTTGTGTTTGATGTGCAGTCCATGTTGAAGAGCGCAATGCATTTTTATGGGTTCTCACATGAGGTAAGATCAGAAGCAAGGAAAGTCCATGATCTCTTTTTTGATATCCTGAAAATTGCATTTCCTGATACGGACTTTCGAGAGGCAAGGAGTGCAGTTTCTTTCTCTGGTCAAATTTCTGCCAGTACTGTAACTTCTCCAAGGCAAGTGGCTGGTAGCCAAAGCAAGAGGCACAGGATTTTAAATGAGGTGGAAACTGATCCATGCACTTCACAGAAGCCACTGCAACGTGCATCTGCTTCAAGTGGCGAAAACACCAGGATCAAATGCCATAACCCACAGAAGGAATCAAGAACTGGAAGTGGTGGTAGTAGCAGCCGAGATCAACTTCAGCATGATGATTCTCCGTTGCTTACTCATCCAGGTGAACTCGTTATATGCAAGAAGAGAAGAAATGAGAGGGAGAAATCATTGGTGAAGTCTAGAACTGGGTCAGCCGGCCCTGTTTCGCCGCCTAGCGTGGGTCCTGCTGTAAGAAGTCCCGGGCCAGGATCAGTCCCCAAGGATGCTAGACTGGCTCAACAGGCTGCCCATGCACAAGGGTGGATTGCCCAATCATCTCAACAGCAAAATGGGTCTGTTGGGTCAGTTGGCTGGGCGAATCCTGTAAAGCGGTTAAGGACAGATTCCGGGAAGAGAAGACCAAGCCATCTATAG 6573 0.431 MHLQSLQQQLLRKPEGNEAVLAYQAALQGAFGSNNFSSPSAMQLPQQSRKFIELAQHGSSQESQLKGQGVEQQMLNPVHQAYLHYALQAAQQKSALAMQSQQQTKMGMLGPSSVKDQEMRMGNLKMQDLMSMQAANQAQGSTSRSLPEQFARGEKQIEQGHQLAPDQKSEGKPSTQGPSIGQLMPGNPIRPVQAPATRQGIQNVGNNQIAVSAQLQAMQAWARERNIDLSHPTNASLMAQLIPMMQSRMVPQQKANESNIGAQSSPVPVSKQQVTSPAVASESSVHANSSSDVSGMSGSAKARQTVPPSNFGPLTNAVTASNSSDMSMQQFNVHGRESQVSLRQPIVVGNGMPSMHPQQSSTNMNLGADHPLNAKNILSGPEPPQMQYMRQLNQSSPQASGPTNEGGPGNYAKSQGAPSQIPQQQHGFTKQQLHVLKAQILAFRRLKKGEGTLPQELLRAIIPPPLELQVQQSIHPSGGPNQDKSAGNIVPEHSRCIESNAKDSQQIPTINGQCSSKQESLARDEKSTVTAIHMQAKPAVTKDPATVLSSGKEEQQSVGCSVKSDQESEREINRNPIRNEMPLDRGKAIAPQSSVSDTMQNKNPAQTSTVVQAKDVGSNRKYHGPLFDFPFFTRKHDSFGSSMMVSSNNNLLLAYDVKDLLFEEGVEVLSKKRTENLKKIEGLLAINLERKLIRPDLVLRLQIEEKKLRLKDLQARLRDEIDQQQQEIMAMPDRPYRKFVRLCERQRIELSRQVQASQRALREKQLKSIFQWRKKLLEAHWAIRDARTARNRGVAKYHERMLREFSKRKDDDRNKRMEALKNNDVDRYREMLLEQQTSLAGDAAERYSVLSSFLTQTEEYLHKLGGKITAAKNQQEMEEAAKAAAAAARLQACFIKEVRAAAACAGEEVMIRNHFMEMNAPKDSSSVSKYYNLAHAVNEKVIRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSEFYNWLPSASCIFYVGGKDQRSKLFSQEVCALKFNVLVTTYEFIMYDRSKLSKIDWKYIIIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSKPFQKEGPNQNAEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCKMSAIQSAIYDWVKSTGTLRLDPEDEKLRVQKNPVYQAKQYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLLYRRIDGTTSLEDRESAIVDFNSPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEEELAGKDRYMGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQETLHDVPSLQEVNRMIARSKEEVELFDQMDEELDWTEDMTRYDQVPKWLRVTTRDVNATIAALSKKPSKNTLLGGNTGMESSEVGSERRRGRPKGKKHLNYKELEDENGEFSEASSEERNGYSAHEEGEIGESEDDGFSGADGAQPIDKDPLEEDGPICDAGYEFPQSTQSARNNLMVEGAGSSGSSSDNQRLTQTVSPSVSSQKFGSLSALALSKRITDELEEGEIAASGDSPMDNQQSGSWIHDRDEGEDEQVLQPKIKRKRSLRVRPRHPMERLEEKSGSEVVSLHRGESLLAVQAEHKYQAPSRADPETKSFGDSNASRHDQNELSLKNKRSLHSRRVSNTSKLHGSPKSSRLNCISTPSEDGEHSRESWEGKPINSSGSLAFATKMPETIQRRCKNVISKLQRRIDKEGHQIVPLLKDLWKRIENSGYTGGSGNSLLDLRKIDQRIDRLEYNGVMELVFDVQSMLKSAMHFYGFSHEVRSEARKVHDLFFDILKIAFPDTDFREARSAVSFSGQISASTVTSPRQVAGSQSKRHRILNEVETDPCTSQKPLQRASASSGENTRIKCHNPQKESRTGSGGSSSRDQLQHDDSPLLTHPGELVICKKRRNEREKSLVKSRTGSAGPVSPPSVGPAVRSPGPGSVPKDARLAQQAAHAQGWIAQSSQQQNGSVGSVGWANPVKRLRTDSGKRRPSHL 2190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0848 2190 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1284 1461 IPR001650 -
Glsi07g0848 2190 MobiDBLite consensus disorder prediction 1558 1656 - -
Glsi07g0848 2190 MobiDBLite consensus disorder prediction 133 193 - -
Glsi07g0848 2190 MobiDBLite consensus disorder prediction 541 570 - -
Glsi07g0848 2190 FunFam ATP-dependent helicase BRM 1193 1403 - -
Glsi07g0848 2190 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1187 1524 IPR027417 -
Glsi07g0848 2190 MobiDBLite consensus disorder prediction 251 320 - -
Glsi07g0848 2190 MobiDBLite consensus disorder prediction 1714 1775 - -
Glsi07g0848 2190 Pfam Helicase conserved C-terminal domain 1283 1394 IPR001650 -
Glsi07g0848 2190 FunFam ATP-dependent helicase BRM 944 1192 - -
Glsi07g0848 2190 Coils Coil 703 727 - -
Glsi07g0848 2190 PANTHER SNF2/RAD54 HELICASE FAMILY 699 1741 - -
Glsi07g0848 2190 MobiDBLite consensus disorder prediction 133 149 - -
Glsi07g0848 2190 Gene3D - 1878 1991 IPR036427 GO:0005515
Glsi07g0848 2190 MobiDBLite consensus disorder prediction 168 182 - -
Glsi07g0848 2190 Pfam SNF2-related domain 956 1260 IPR000330 GO:0005524|GO:0140658
Glsi07g0848 2190 SUPERFAMILY Bromodomain 1933 1992 IPR036427 GO:0005515
Glsi07g0848 2190 FunFam Brahma1 1881 2004 - -
Glsi07g0848 2190 MobiDBLite consensus disorder prediction 1669 1699 - -
Glsi07g0848 2190 SMART helicmild6 1310 1394 IPR001650 -
Glsi07g0848 2190 MobiDBLite consensus disorder prediction 1834 1855 - -
Glsi07g0848 2190 MobiDBLite consensus disorder prediction 2151 2169 - -
Glsi07g0848 2190 SMART QLQ_2 426 463 IPR014978 GO:0005524|GO:0005634|GO:0006355
Glsi07g0848 2190 MobiDBLite consensus disorder prediction 2015 2190 - -
Glsi07g0848 2190 MobiDBLite consensus disorder prediction 2096 2112 - -
Glsi07g0848 2190 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 933 1183 IPR027417 -
Glsi07g0848 2190 CDD SF2_C_SNF 1279 1404 - -
Glsi07g0848 2190 MobiDBLite consensus disorder prediction 1792 1873 - -
Glsi07g0848 2190 MobiDBLite consensus disorder prediction 1733 1751 - -
Glsi07g0848 2190 MobiDBLite consensus disorder prediction 358 428 - -
Glsi07g0848 2190 FunFam ATP-dependent helicase BRM 754 828 - -
Glsi07g0848 2190 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 965 1130 IPR014001 -
Glsi07g0848 2190 MobiDBLite consensus disorder prediction 386 428 - -
Glsi07g0848 2190 Gene3D - 755 828 - -
Glsi07g0848 2190 Gene3D - 944 1192 IPR038718 -
Glsi07g0848 2190 SMART bromo_6 1879 1994 IPR001487 GO:0005515
Glsi07g0848 2190 MobiDBLite consensus disorder prediction 1808 1826 - -
Glsi07g0848 2190 MobiDBLite consensus disorder prediction 548 563 - -
Glsi07g0848 2190 MobiDBLite consensus disorder prediction 2067 2084 - -
Glsi07g0848 2190 MobiDBLite consensus disorder prediction 2037 2060 - -
Glsi07g0848 2190 Pfam QLQ 428 461 IPR014978 GO:0005524|GO:0005634|GO:0006355
Glsi07g0848 2190 Gene3D - 1193 1403 IPR027417 -
Glsi07g0848 2190 MobiDBLite consensus disorder prediction 1558 1573 - -
Glsi07g0848 2190 ProSiteProfiles QLQ domain profile. 427 463 IPR014978 GO:0005524|GO:0005634|GO:0006355
Glsi07g0848 2190 SMART ultradead3 949 1138 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0848 Glsi-ChrGlsi07 7902818 7914572 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0848 974 1419 RAD5 or RAD16-like Gene Family AT1G02670 25.919 4.88e-28 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Glsi07g0848 SNF2_N 1.8e-65 CL0023