Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0846 ATGGCAGGTTGGTCGATGCTTGATGATGGGCTTGTTGTAGATATCACTAAAACCCCTCAAAAGCCAGATGGATTCTGGGTTGATCTTGAACCGGTTTCAGAAGCCCATGAAGTCGAAGTTGAAGGAGACCGAGGTAGCAGTGCCATTGAAGGTTTATCCGACGAGATCCAGTGCTGTTTTGATCAGTTTCTTCGTGGATTTTTGAAAGAGATCTGTGCTCATAAATCTTTTCGGCCTATTCCTCCAATGCTTGGTAATGGGCAACCTGTGGATTTGTATAAGCTCTTCATCGTTGTGAAGGAGAACGGTGGGTATGATGCCGTCTTCAAAAACAGGTTGTGGGATGTCGTGGGCGAAAAATCTGGGTTGGGTATGAGCGTTGGTTCATCGGCGAAGCTGATTTATTATAAGTACTTGAGTACTTTAGAGACATGGCTCAGAAATGTTGCTAATGGTAGGATGCCTGATTGCAGTTTGGTGGATAGTAGAGTTAACTTTGGTAGGCGTTTAATGGAATTGCTAGCTGAAGTTAAAGGGCTCTTGTCGGATTATACTGGTCAGGAGGTGGGAGATGAGGTGTGTCGACTTTATGATTTCGAGAGAGAATATGACTACCCAAATGGGAGGAAATCCTGTAACACTAAAAAAGTAAAGAGTAAAGTTCAAAATGGAGGAGTTGTTGGTTTGAATATGCCAAGGAACCTGTGCATTAATGATGATACAATGGAAACAAAGGAAGAGTTTGACGGAGAGAAGGCCTTTGCAAAGAGAGCAGTAAATGCACCAATTGTTGGAAATTTGTGCAATAATAATGAGGTAAACAGCACACCTAAATTGTGCGATGGAGGCAAGAGATGTGATGACAATGATGATGATGATGTCTTGATATTGGATTCATCTAGTGTTAATAAAGAGAGCTTTGGTCGGAAGAGGAAGAGAGAATCTGCATGGGAAATGCTACCACATGTTGGAAGCTTGTGCAATAGTAATGGGGTGGATAACGCACTTAAATTGTCTTATGGAGGCAAGAGATGTGACAATGATGATGATGATGTCTTGATATTGAATTCATCAAGTGTTTACAGAGAGAGCTTTGGTCGTAAGAAGAAGAGAGAGTCTATGTGGGAAATGCTAAGTTGGGTTACTAACACTGCAAAAAATCCTTGTGATCCTGCAGTAGGTTCAATACCTGAAAGGTTGAAGTGGAATTCTCACAGTAATGAAGAGATTTGGAAGCAGGTTTTATTGTTTCGAGAGGCTGCCTTTCTAAAAAGACATGTTGAGTCAAGCAATGAACCACTTAATTGGCAGGGTCAGAAGATGCATCCTTGCATGTATGATGATCAACTGGGGACCACTTACAATTTTAGGGAGAGGTTGAAGTGTGACAAGAGGTTTTTACAAGTCTCTTCAGAATTATCTGTAGGACCCCAAACTTCAAGTCCTCACACTGATGATCGTGCTGAGAAAAACTTGTTTGATTCCTCTACTGTAAATTCAGGTATTGATAAAAGTGGCACAATGCCCATCCCGTTGGGGCCAACTCATCAAGCTGAAGTACCAGAATGGACTGGCATGACTTCTGAAAGTGATCCTAAGTGGTTGGGGACCCAAATATGGTCATCAGAAAAAGTAAATCGCAGACTTCTTGTTGAACGGGACCCCATTGGAAAGGGAAGGCAGGATTCATGTGGCTGCTATGTACTGGGTTCTGTTGAGTGTGTAAGATTTCACATTGCTGAGAAAAGGGCTAAAGTTAAACTGGAACTGGGTGTGGCTTTTCACCAGTGGAATTTAGATAAGGTAGGTGAAGAGGTTAGCTGTTTGTGGACGGAGGAGGAAGAGAAGAAATTCAAGGATTTGGTGCAGTCAAACCGTCCATCACTTGAGAGATATTTCTGGGATCATATTTTTAAATCATTTCCTAAGAAAAGCAGGGAAGATTTAGTCAGCTACTACTTCAATGTTTTTCATTTGCAGCGCAGAGGATACCAGAATAGGCATACTCCAAATAACATTGACAGTGATGATGAAGAATCAGAGTATGGACCATTAAGGAAGGTTTTTGGACATCAACAACAGAAGTCATCCAAATCTATCTTATTATCCCCCAAAAAACCACAGACAACGTGA 2133 0.4163 MAGWSMLDDGLVVDITKTPQKPDGFWVDLEPVSEAHEVEVEGDRGSSAIEGLSDEIQCCFDQFLRGFLKEICAHKSFRPIPPMLGNGQPVDLYKLFIVVKENGGYDAVFKNRLWDVVGEKSGLGMSVGSSAKLIYYKYLSTLETWLRNVANGRMPDCSLVDSRVNFGRRLMELLAEVKGLLSDYTGQEVGDEVCRLYDFEREYDYPNGRKSCNTKKVKSKVQNGGVVGLNMPRNLCINDDTMETKEEFDGEKAFAKRAVNAPIVGNLCNNNEVNSTPKLCDGGKRCDDNDDDDVLILDSSSVNKESFGRKRKRESAWEMLPHVGSLCNSNGVDNALKLSYGGKRCDNDDDDVLILNSSSVYRESFGRKKKRESMWEMLSWVTNTAKNPCDPAVGSIPERLKWNSHSNEEIWKQVLLFREAAFLKRHVESSNEPLNWQGQKMHPCMYDDQLGTTYNFRERLKCDKRFLQVSSELSVGPQTSSPHTDDRAEKNLFDSSTVNSGIDKSGTMPIPLGPTHQAEVPEWTGMTSESDPKWLGTQIWSSEKVNRRLLVERDPIGKGRQDSCGCYVLGSVECVRFHIAEKRAKVKLELGVAFHQWNLDKVGEEVSCLWTEEEEKKFKDLVQSNRPSLERYFWDHIFKSFPKKSREDLVSYYFNVFHLQRRGYQNRHTPNNIDSDDEESEYGPLRKVFGHQQQKSSKSILLSPKKPQTT 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0846 710 Gene3D - 50 154 IPR036431 GO:0003677
Glsi07g0846 710 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 42 707 - -
Glsi07g0846 710 SMART ARID_2 54 143 - -
Glsi07g0846 710 CDD SANT 610 657 IPR001005 -
Glsi07g0846 710 ProSiteProfiles ARID domain profile. 54 147 IPR001606 GO:0003677
Glsi07g0846 710 SMART ELM2_2 510 561 IPR000949 -
Glsi07g0846 710 SMART sant 606 659 IPR001005 -
Glsi07g0846 710 SMART bright_3 55 148 IPR001606 GO:0003677
Glsi07g0846 710 SUPERFAMILY ARID-like 59 156 IPR036431 GO:0003677
Glsi07g0846 710 MobiDBLite consensus disorder prediction 671 685 - -
Glsi07g0846 710 CDD ARID 60 143 - -
Glsi07g0846 710 Pfam Myb-like DNA-binding domain 610 656 IPR001005 -
Glsi07g0846 710 MobiDBLite consensus disorder prediction 667 710 - -
Glsi07g0846 710 Pfam ARID/BRIGHT DNA binding domain 68 143 IPR001606 GO:0003677
Glsi07g0846 710 MobiDBLite consensus disorder prediction 690 710 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0846 Glsi-ChrGlsi07 7879823 7890316 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0846 53 162 ARID Transcription Factor Family AT1G20910 32.174 7.71e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Glsi07g0846 ARID 5.5e-10 CL0123