Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0844 ATGGGAGGTTGCTGCTGTTCTGCCAGAAATCCTCATCTGCATGGAACACCAGTGTATTACTATTGCCCACCAGCTTTGGATGAGCGTCAGTCATTAACCTCTAATGACCGTACAGCTGCTTCACTCGCAGCTGGATTGCTGGTTGGTTTGAACCTGGAAACATCCACACCTGATACATACCAGCCCCCTCCTGCACCTTTGCCATATGATATGGTCTTGGGATGTCCAGTATCTACAGATTCCGAATCTGGAAGAAAAACAGTTCGTAGTAGCAGTTTTGAAACATTAACAACATGTGAAGATATTGAAGAATCAGATTGCAAAGCTCAAGCTAATTCTGATCTTTTATCCCCAAGGAAAACAGAACTATCAAAATCAAATGAATCTCATGCATTAATGACAGAAGAGGAGGAAGTCTGTCCAATTTGTCTTGAAGAATATGATGTTGAGAATCCTAAAACTCTGACAAAGTGTGTACACCACTTTCACCTATCTTGCATTCTTGAGTGGATGGAAAGAAGTGACTCCTGTCCTATATGTGATCAGGAGATGATATTTGACTAG 564 0.4167 MGGCCCSARNPHLHGTPVYYYCPPALDERQSLTSNDRTAASLAAGLLVGLNLETSTPDTYQPPPAPLPYDMVLGCPVSTDSESGRKTVRSSSFETLTTCEDIEESDCKAQANSDLLSPRKTELSKSNESHALMTEEEEVCPICLEEYDVENPKTLTKCVHHFHLSCILEWMERSDSCPICDQEMIFD 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0844 187 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 35 186 - -
Glsi07g0844 187 FunFam Putative E3 ubiquitin-protein ligase RHB1A 116 185 - -
Glsi07g0844 187 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
Glsi07g0844 187 SMART ring_2 140 180 IPR001841 -
Glsi07g0844 187 Pfam Ring finger domain 140 180 IPR001841 -
Glsi07g0844 187 SUPERFAMILY RING/U-box 132 186 - -
Glsi07g0844 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 185 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0844 Glsi-ChrGlsi07 7849514 7852468 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0844 1 187 C3H Transcription Factor Family AT4G00335 57.754 3.78e-75 222