Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0839 ATGGGCTTTCCAGCTGGATACACACAGCTCTGCTTCCCCAAGTTCTTCCTCCACATACTTTCCCTTCTGGGTTTCATCCGAAACCTCGTCTTCTTGCTCTTCTACTTTTTGGGTCTTTCAGATTTCTTAGAAACCGAGGTCGTTTGGTCCGAATCTTATGCCCAGATACCCGAGAGACCGCCCGTTTCGGTGCTTCTGATCCGGGAATTCCTTCCGGTCGTCAAGTTCGGCGAGATTCCGGCATCTGTCGCCGGAGACACGCTGAAGAGTTGCGCGGTTTGCCTGTACGAGTTCGAGGAGGAGGAAGAGATCAGGTGCATGAGGAACTGCAAGCACATTTTCCACCGGAATTGTGTGGACCGTTGGATGGACTATGATCAGAAAACGTGCCCTTTGTGTAGGACCCCCTTTGTGCCCGATGGGCTATGGGCTGCTTCTGGAGTTCCTGATTTTAACGAAGAGTATTAA 468 0.5128 MGFPAGYTQLCFPKFFLHILSLLGFIRNLVFLLFYFLGLSDFLETEVVWSESYAQIPERPPVSVLLIREFLPVVKFGEIPASVAGDTLKSCAVCLYEFEEEEEIRCMRNCKHIFHRNCVDRWMDYDQKTCPLCRTPFVPDGLWAASGVPDFNEEY 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0839 155 SMART ring_2 91 133 IPR001841 -
Glsi07g0839 155 SUPERFAMILY RING/U-box 90 140 - -
Glsi07g0839 155 PANTHER RING ZINC FINGER PROTEIN-RELATED 27 140 - -
Glsi07g0839 155 Pfam Ring finger domain 90 134 IPR001841 -
Glsi07g0839 155 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 139 IPR013083 -
Glsi07g0839 155 FunFam RING-H2 finger protein ATL73 67 141 - -
Glsi07g0839 155 ProSiteProfiles Zinc finger RING-type profile. 91 134 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0839 Glsi-ChrGlsi07 7799938 7800405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0839 1 142 C3H Transcription Factor Family AT1G63840 50.685 1.11e-44 142