Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0789 ATGCAGACCCCTCCATCCACATCCATGGATTGGGAATCAAATCATGACTCGATCAATGTGAAAGGAATCAAATTTGGAATTTTGCAGTGGGCAATGTGGAAGGAATCCAATTCCTCCATCAACGAACGGGAGATGAATATAGTAAGTTCAAGAGCAGTATCATCATCATCAACTATGCCGAAGAATAAAGGAAAGGGAGGAAAGAACCGAAAGAGAGGAAAGAACGAGGCGGACGATGAGAAGCGAGAGCTTGTCTTCAAAGAAGACGGGCAAGAATACGCCCAGGTCCTTCGTATGCTCGGCAACGGACGCTGCGAGGCTATGTGCATCGACGGCACCAAGCGCCTCTGCCATATCCGTGGCAAGATGCACAAGAAGGTGTGGATCGCCGCCGGCGACATCATCCTTGTCGGACTCCGGGACTACCAGGATGACAAGGCTGATGTGATCCTCAAGTACATGCCCGACGAGGCTAGGCTGTTGAAGGCGTATGGAGAGTTGCCGGAGAGTACCCGGCTTAACGAGGGTATTGGTGGCGGATTGGATGAGGAGGAGGATGGCACCGGGAACGATTACATCGAGTTCGAGGACGAGGACATTGATAAAATTTAA 612 0.5065 MQTPPSTSMDWESNHDSINVKGIKFGILQWAMWKESNSSINEREMNIVSSRAVSSSSTMPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIGGGLDEEEDGTGNDYIEFEDEDIDKI 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0789 203 CDD S1_IF1A 91 167 IPR001253 GO:0003743|GO:0006413
Glsi07g0789 203 MobiDBLite consensus disorder prediction 49 63 - -
Glsi07g0789 203 NCBIfam translation initiation factor eIF-1A 72 168 IPR001253 GO:0003743|GO:0006413
Glsi07g0789 203 SMART eIF1neu4 86 168 IPR001253 GO:0003743|GO:0006413
Glsi07g0789 203 MobiDBLite consensus disorder prediction 174 203 - -
Glsi07g0789 203 ProSitePatterns Eukaryotic initiation factor 1A signature. 99 121 IPR018104 GO:0003743|GO:0006413
Glsi07g0789 203 Gene3D - 60 203 IPR012340 -
Glsi07g0789 203 MobiDBLite consensus disorder prediction 180 203 - -
Glsi07g0789 203 Pfam Translation initiation factor 1A / IF-1 90 151 IPR006196 GO:0003723|GO:0003743|GO:0006413
Glsi07g0789 203 PANTHER EIF-1A 59 203 IPR001253 GO:0003743|GO:0006413
Glsi07g0789 203 MobiDBLite consensus disorder prediction 49 83 - -
Glsi07g0789 203 ProSiteProfiles S1 domain IF1 type profile. 80 154 IPR006196 GO:0003723|GO:0003743|GO:0006413
Glsi07g0789 203 Hamap Translation initiation factor 1A [eif1a]. 74 168 IPR001253 GO:0003743|GO:0006413
Glsi07g0789 203 FunFam Eukaryotic translation initiation factor 1A 60 203 - -
Glsi07g0789 203 SUPERFAMILY Nucleic acid-binding proteins 60 202 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0789 Glsi-ChrGlsi07 6978642 6980609 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0789 59 203 Eukaryotic Initiation Factors Gene Family AT2G04520 88.966 7.66e-91 261