Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0744 ATGGGATATGGCTCAATCCCTACACAGTTGAAGTGTCGGCGAATCAACAGCGATAGCAGAAGCGCAGTGGGCACAGAGAAGCAATATGCAAATGCGGGAAAGGATGCTGGGCATCAAATCAACTTGATAATAGAAGTTGGGCTCCGATCAAAAGCAGGGCTTGGTGGGGAGGCAGAATTGGGTATGGATATTGGGATTGAAGCAAAGAGCGAGAGAACGGGTTTGACGTTGAGGGCGCTATATTCTGATGAGCTGGCGAAATCTACTGAAAATCAGCAACCGGAGCAAGTGTGTAGTTTCTTTAGGAAACCGGTTAACAAGAAGAATCTAAGAAAACGAACAATTGACGAAGATGACGACGAGGGTGATTCCAAAAATGAAAGCTCTTTGTTACATACTCAGAAAAAACCCTTGAAGGCTGACAATAAGTTGTACTTTTCCACTGGTCCCTCAAAAAGTACTGCATCTAATGAACCGGAGGAATCTGAAAAACCAGTGTTTCAGTTTGAGTCTTCAAAAGAGATTCAAGTTCATCATGATAACAAAGCAACGGCCATTCTAGAGACTGAGACTGATTTTTCAAAAGATGCTCGAGCCATTCGGGAAAGAGCCCTCAAGCGAGCAGAGGAGAGTTTGAAGGGGAAAGGCACTAATTCTGGGAATGAAAAATTGTACAAGGGCATCAATAGTTACACAGATTACAAGGCTGGTTTTCGTAGGGAGCAAACAATTGCCAGTGAAAAAGCTGGTGGGTCACATGGTCCTCTGAGGGCGTCAGCTCATATAAGAGTTTCAGCAAGATTTGATTATCAGCCAGACATATGTAAGGATTACAAGGAGACTGGTTACTGTGGGTATGGTGATTCGTGTAAGTTTATGCATGATCGAGGGGATTACAAGTCTGGGTGGCAATTGGAGAAGGAATGGGAAGAAGCTGAGAAAGCAAGGAAAATGAGATTGGCTGCAGGAGAGGATTTAGGTGAGGAGGATGCTAATTTGACTGATGAAGATGACGATGATTCATTACCATTTGCATGTTTCATTTGTAGAAAGCCTTTTGTGGATCCTGTTGTAACCAATTGCAAGCACTACTTCTGCGAGCATTGTGCATTGAAGCATCATGCGAAGAATAAGAAGTGTTTTGTGTGCAACAAGCCTACTCTTGGCATTTTTAATACGGCTCATGAGATACGCAAGAAAATGGCTGCAGAGGGTCAATGA 1221 0.4341 MGYGSIPTQLKCRRINSDSRSAVGTEKQYANAGKDAGHQINLIIEVGLRSKAGLGGEAELGMDIGIEAKSERTGLTLRALYSDELAKSTENQQPEQVCSFFRKPVNKKNLRKRTIDEDDDEGDSKNESSLLHTQKKPLKADNKLYFSTGPSKSTASNEPEESEKPVFQFESSKEIQVHHDNKATAILETETDFSKDARAIRERALKRAEESLKGKGTNSGNEKLYKGINSYTDYKAGFRREQTIASEKAGGSHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKEWEEAEKARKMRLAAGEDLGEEDANLTDEDDDDSLPFACFICRKPFVDPVVTNCKHYFCEHCALKHHAKNKKCFVCNKPTLGIFNTAHEIRKKMAAEGQ 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0744 406 FunFam Zinc finger CCCH domain-containing protein 1 267 301 - -
Glsi07g0744 406 MobiDBLite consensus disorder prediction 112 167 - -
Glsi07g0744 406 ProSitePatterns Zinc finger RING-type signature. 361 370 IPR017907 -
Glsi07g0744 406 Gene3D - 267 301 - -
Glsi07g0744 406 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 270 295 IPR000571 GO:0046872
Glsi07g0744 406 PANTHER ZINC FINGER PROTEIN 183 93 404 IPR039971 -
Glsi07g0744 406 SMART c3hfinal6 269 296 IPR000571 GO:0046872
Glsi07g0744 406 ProSiteProfiles Zinc finger C3H1-type profile. 269 297 IPR000571 GO:0046872
Glsi07g0744 406 SUPERFAMILY RING/U-box 345 388 - -
Glsi07g0744 406 ProSiteProfiles Zinc finger RING-type profile. 346 384 IPR001841 -
Glsi07g0744 406 SMART ring_2 346 383 IPR001841 -
Glsi07g0744 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 344 403 IPR013083 -
Glsi07g0744 406 MobiDBLite consensus disorder prediction 112 139 - -
Glsi07g0744 406 Pfam Zinc finger, C3HC4 type (RING finger) 345 387 - -
Glsi07g0744 406 CDD RING-HC_RNF113A_B 339 392 - -
Glsi07g0744 406 FunFam RING finger protein 113A 344 403 - -
Glsi07g0744 406 SUPERFAMILY CCCH zinc finger 268 300 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0744 Glsi-ChrGlsi07 6559653 6563059 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0744 88 404 C2H2 Transcription Factor Family AT1G01350 70.533 1.14e-167 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi07g0744 zf-C3HC4_3 2.3e-08 CL0229