Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0736 ATGGCCATCCTGGAGCTCCTCTTCTTTCACTTCTTCATCTTTCCCATCACATATGCCTCGGAGGATTGCCAATTCGCAAGGTGCAGCAACAACAGGATCATCATTCGTTTCCCCTTCCAACTACAAGGTGAGCAAAATCCATACTGTGGATATCCTGGTTTCAATTTAATCTGCACAAATGACAGCAAAACGGTTCTGAAACTTCCTTATTCTGGAGAATTCCATGTGCGCAACATCAACTACGCCACACAGCATATTCAACTCTACGACCCTGATAATTGCCTTCCCAAACGTCTTCTTAGCCTCAACTTTTCAGGCACTCCCTTTGCTGCCATTTTTCGCCGGAACTACACCTTCCTAAGCTGCCCATCTCAGAACGCAGGGTCACAGTTCACTGCCATAGATTGTCTCAGCAGTTCTACAAATTTTGTATCAGCTGTTCCTTCAGCTATGTTGGGCCATTCATTGCCTGAACCTTGCTATGTTATTAATAGAACTTCAGTTCCAGTTGCAAGGCTAGGAGGACAGTATGAAGAAACTTTCGGAGATGATCTTAATGAAGATCTTTGGTTAACATGGTATAAACCTGATTGCAGAAATTGCGAGTCACAAGAGGGCATGTGTGGATTTGAGAGCAGAAACAGTAATCAAATTCATTGTTTCTCTGATTCCAAAACAGATCCAATTTTCTCAGGTAACTCAGAGGATGGTCTTCGAGTTTTCAGAATCATTACCTTATCCATAGCTGGACCAGCAGCGATTTGCGTTACTATAGTGGCATGTTTGGCTTGTTTCATGGACAGCAGAAGAGGCACTTCGGCACCCAGCAGATCAACTAATGCAACTGCTGCAATATCACCCCAACCTCCAATGGCTGCTGCTACAATGGGTCTGGATGAGTCTGCAATTGAGTCCTATCAGAAAGTAGTACTCGGAGAGAGCCGAAGATTGCCAGGACCCAACGATGGCACTTGCTCCATTTGCCTCTCAGAATATAACTCCAAAGAAACCATCAGATGCATCCCGGACTGCACACACTGTTTCCATGCTGATTGCATCGATGAATGGCTTCGAATGAATAGCTCTTGCCCTGTTTGCCGCAGCTCTCCCTCTCCTTCTCCTCTTCATCTTATGTACAAGTTCCCCAAAACTATTCAGATTTCGTTTCCCTCAGCTCAGCCAAGACTCAGGACTTTCTTAGTTGGTTAA 1209 0.4483 MAILELLFFHFFIFPITYASEDCQFARCSNNRIIIRFPFQLQGEQNPYCGYPGFNLICTNDSKTVLKLPYSGEFHVRNINYATQHIQLYDPDNCLPKRLLSLNFSGTPFAAIFRRNYTFLSCPSQNAGSQFTAIDCLSSSTNFVSAVPSAMLGHSLPEPCYVINRTSVPVARLGGQYEETFGDDLNEDLWLTWYKPDCRNCESQEGMCGFESRNSNQIHCFSDSKTDPIFSGNSEDGLRVFRIITLSIAGPAAICVTIVACLACFMDSRRGTSAPSRSTNATAAISPQPPMAAATMGLDESAIESYQKVVLGESRRLPGPNDGTCSICLSEYNSKETIRCIPDCTHCFHADCIDEWLRMNSSCPVCRSSPSPSPLHLMYKFPKTIQISFPSAQPRLRTFLVG 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0736 402 CDD RING-H2_EL5-like 325 367 - -
Glsi07g0736 402 Pfam Ring finger domain 324 367 IPR001841 -
Glsi07g0736 402 Pfam Wall-associated receptor kinase C-terminal 166 223 IPR032872 -
Glsi07g0736 402 SUPERFAMILY RING/U-box 318 371 - -
Glsi07g0736 402 SMART ring_2 325 366 IPR001841 -
Glsi07g0736 402 ProSiteProfiles Zinc finger RING-type profile. 325 367 IPR001841 -
Glsi07g0736 402 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 371 IPR046948 -
Glsi07g0736 402 Pfam Wall-associated receptor kinase galacturonan-binding 23 90 IPR025287 GO:0030247
Glsi07g0736 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 288 372 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0736 Glsi-ChrGlsi07 6483639 6486930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0736 28 372 C3H Transcription Factor Family AT2G25410 46.023 1.41e-99 299