Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0734 ATGATAATTAAGCGGACTATGAAAAGTGAAATGCCGAACCTGAAGCGATGTAAGCTAGAGGAGCACGATTCTGAGGGCTATGTGTATGCGGCGATGCCCAAGAAACGAAGGGCAAATGGGTTTTGTTCTCTTGGCATGCCAGGTGAGGCTGAAGATTTGAGCAACGGTTCTGGGTCTTGGAGCAGTAAAGGATCGCACTGCGGTGGTGAGGCACAGTTGAATTCAAATTGTATGCAGTTGAATGATAGAACAGTACTAAACCGGGCCTCAGAAAGGCTTCGCCCTCCATTATTGCGGTCATCGCGAGGTCGCTCTCAGATGCTTCCGTCGAAGTTCAGTGACTCAGTTCTTGATACATGGAGGAATGGAGGAATCAAAGTGGAGGACACAGACTCCAGCTTTGAAGATGATAATGTTTTTGGAGAAGATGGGGCTGAGTTTAGTGGAATGGGGTTTGTAAAACAGGGACAGAGAGTTAACTATAGCTTCAAAAATTCAAAGTGTTGTCCATATCCTCAAATGGAGGAGGAACGAGACTTGGGTGCCTTTGGTTTCAATGACTTCGACGGCAGGAAGCACGGGAATTCGTTTAGTACCATTAAAACGACGGTTAAGGACAGTCGTTCATCCTTAGTTAAAATTGAGAGTTATACGTCGGGACTTAATTTTGAGGGCGTAGACCGAAAGACTAATGGAAATGCTGAAAAGAGGAAAGACATTTACAAACCAGAGGATTTTACTTCCGGTGATATAGTTTGGGCAAAATGTGGGAAGAGATACCCTGCTTGGCCTGCTGTAGTGATTGATCCCATCATGCAAGCTCCCAAATCGGTCCTGAGCTGTTGTGTTCCTGGAGCAATTTGCGTGATGTTTTTTGGGTATTCAAAAAATGGAAAGCAAAGGGACTATGCATGGGTGAGACAGGGAATGATATTCCCCTTCATGGAATTCATGGACAGATACCAGGGGCAGACCCGGTTGTACAAGAGCAAACCGAGTGACTTTCAGATGGCACTAGAGGAGGCATTGTTGGCAGAAGATGGTATTTTGGACTCACATTTGGAAGCAGAGCAAATTACTAATGTTGAAGTTCATCCCAGTGGATTTATAGAGGTTACAGATTCATATGCTGATCAGGAATACTACTGTCAGGGTCAGGATACTAGACCTTGTGCTGGATGTGCTTTGATGGTACCTTGCAAAATTATGAAGAAGATTAAGGATTCCAGTTGTTCTCAACTTTATTGTAAACATTGCTCAAAGCTGCGAAAATCAAAACAATATTGTGGCATTTGCAAAAAGATTTGGCACCATTCAGATGGTGGGAATTGGGTATGCTGTGACGGTTGTAATGTTTGGGTGCATGCTGAGTGTGATAAAATCTCCAGCAAACTTTTTAAGGATCTGGAAAATATAGATTACTATTGTCCAGATTGCAAATCAAAATTCAACTGTAAATTACCAGTATCACAATCATACAAGCCAAGAATCAAATCAATAGAAAATAGCCAAAAACATATGATACCTGACAAGGTAACGGTGGTGTGCAATGGCATGGAAGGAGTTTACATTCCAAGTCTTCATTTGGTTATGTGCAAGTGTGGTTCATGTGGGTCAAGGAAGCAGACACTGAGTGAATGGGAACGGCATACAGGTTGCAGAGCCAAAAAATGGAAATATAGTGTGAAAGTGAAAAGCACAATGCTACCGCTAGAAAAATGGATTACAGAACACAATTTTCAATCTGGAGTTTCTCTGCAGTTAGACCAGCAGCAGGTACTTACCTTTTTGCAAGGTGTTATTATTATTGTTGTTGAATTTTGTCTGGACATTGTGTGCCAAATAGCAGTCCACCAAGAATGTTATGGGGCGATGAATGTTCAGGATTTTACTTCTTGGGTTTGTAGAGTATGTGAAACTCCTGATGTTGAGAGAGAATGCTGCCTCTGTCCAGTAAAAGGTGGTGCTCTAAAGCCAACTGATGTTGAAATGCTGTGGGTTCATGTAACATGTGCTTGGTTCCGGCCTGAAGTTAGTTTCCAAAACCATGAGACAATGGAACCTGCCATTGGAATCCTTAAAATTCCTCCTAATTCCTTTTTAAAGATTTGCGTTATCTGTAAACAAAGCCATGGTTCCTGCTTAAGTTGTTGCAAATGTGCTACTTATTTTCATGTGATGTGCGCGATAAGAGCAGGATATAGCATGGAATTGCATTCCATGGAGAAGAATGGAATTCAGATAACAAGGAAGCTAATATATTGTGCAGTTCATAGGATCCCAAAACCTGATTCAGTACTCGTTGTACACACACCCCTGGGGATTTTCTCTCCCAGAACTTCGCTTCAAAATCATAAGGGATGCTTCAGGGGATCAAGGCTGGTTTCATCAAAGAATGTAGAACTTCTTGAAGAATCTTCAACCTCCGAGACTAATGAGGTTGAGCCACTGTCTGCTGCCAGATGTCGTGTTTACAGAAGGCCTCTCAATAAGAAGGCTGATGTGCCAATAATTCACTTACTGAGGGGATCAAGCAATCATTCTTTAAGCGCAATAACTGAATTGAACAGCTATGAGGATACTGAAGATTGTAAAGTATTTACTTCGCTCAAGGACCGCCTTCAACATTTACAGAAAACTCAAAAACATCAAGTTTGCTTTGGAAAATCAGGTATACATGGATGGGGCCTCTTTGCACATCGAGATATACAAGAAGGAGACATGGTTGCTGAGTATTGTGGTGAGCAGGTGAGGCGTAGTGTTGCTGATTTAAGGGAAGCAAAGTACCGTTCAGAAGGAAAAGATTGTTATCTGTTCAAGATCAGCGAGGAAGTGGTAATTGATGCAACGCACAAGGGCAATATAGCACGCTTAATAAACCATTCTTGCATGCCCAACTGCTATGCAAGGATTATGAGTATGGGAGACGAGAGCCGAATTGTTCTTATTGCCAAGAACAATGTTGCTGCTGGTGAAGAACTAACGTATGATTACTTGTTCGATCCAGATGAACGCGATGAACTGAAAGTTCCCTGTCTTTGTAAAGCCCCCAATTGTAGGAAATTTATGAACTAG 3075 0.4211 MIIKRTMKSEMPNLKRCKLEEHDSEGYVYAAMPKKRRANGFCSLGMPGEAEDLSNGSGSWSSKGSHCGGEAQLNSNCMQLNDRTVLNRASERLRPPLLRSSRGRSQMLPSKFSDSVLDTWRNGGIKVEDTDSSFEDDNVFGEDGAEFSGMGFVKQGQRVNYSFKNSKCCPYPQMEEERDLGAFGFNDFDGRKHGNSFSTIKTTVKDSRSSLVKIESYTSGLNFEGVDRKTNGNAEKRKDIYKPEDFTSGDIVWAKCGKRYPAWPAVVIDPIMQAPKSVLSCCVPGAICVMFFGYSKNGKQRDYAWVRQGMIFPFMEFMDRYQGQTRLYKSKPSDFQMALEEALLAEDGILDSHLEAEQITNVEVHPSGFIEVTDSYADQEYYCQGQDTRPCAGCALMVPCKIMKKIKDSSCSQLYCKHCSKLRKSKQYCGICKKIWHHSDGGNWVCCDGCNVWVHAECDKISSKLFKDLENIDYYCPDCKSKFNCKLPVSQSYKPRIKSIENSQKHMIPDKVTVVCNGMEGVYIPSLHLVMCKCGSCGSRKQTLSEWERHTGCRAKKWKYSVKVKSTMLPLEKWITEHNFQSGVSLQLDQQQVLTFLQGVIIIVVEFCLDIVCQIAVHQECYGAMNVQDFTSWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFRPEVSFQNHETMEPAIGILKIPPNSFLKICVICKQSHGSCLSCCKCATYFHVMCAIRAGYSMELHSMEKNGIQITRKLIYCAVHRIPKPDSVLVVHTPLGIFSPRTSLQNHKGCFRGSRLVSSKNVELLEESSTSETNEVEPLSAARCRVYRRPLNKKADVPIIHLLRGSSNHSLSAITELNSYEDTEDCKVFTSLKDRLQHLQKTQKHQVCFGKSGIHGWGLFAHRDIQEGDMVAEYCGEQVRRSVADLREAKYRSEGKDCYLFKISEEVVIDATHKGNIARLINHSCMPNCYARIMSMGDESRIVLIAKNNVAAGEELTYDYLFDPDERDELKVPCLCKAPNCRKFMN 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0734 1024 SUPERFAMILY SET domain 875 1021 IPR046341 -
Glsi07g0734 1024 FunFam Histone-lysine N-methyltransferase 642 761 - -
Glsi07g0734 1024 SMART set_7 883 1005 IPR001214 GO:0005515
Glsi07g0734 1024 Pfam PHD-finger 612 639 - -
Glsi07g0734 1024 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 422 483 IPR013083 -
Glsi07g0734 1024 Gene3D SET domain 795 1024 IPR046341 -
Glsi07g0734 1024 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 640 760 IPR013083 -
Glsi07g0734 1024 CDD PHD_TCF19_like 429 479 - -
Glsi07g0734 1024 Gene3D - 239 347 - -
Glsi07g0734 1024 ProSiteProfiles Extended PHD (ePHD) domain profile. 644 759 IPR034732 -
Glsi07g0734 1024 CDD SET_SETD1-like 873 1020 - -
Glsi07g0734 1024 ProSiteProfiles PWWP domain profile. 248 317 IPR000313 -
Glsi07g0734 1024 SMART PWWP_4 246 315 IPR000313 -
Glsi07g0734 1024 ProSiteProfiles Zinc finger PHD-type profile. 426 482 IPR019787 -
Glsi07g0734 1024 SUPERFAMILY Tudor/PWWP/MBT 239 351 - -
Glsi07g0734 1024 SMART PostSET_3 1008 1024 IPR003616 -
Glsi07g0734 1024 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1024 IPR025780 -
Glsi07g0734 1024 ProSiteProfiles SET domain profile. 883 999 IPR001214 GO:0005515
Glsi07g0734 1024 PANTHER PHD FINGER PROTEINS 51 458 - -
Glsi07g0734 1024 ProSiteProfiles Post-SET domain profile. 1008 1024 IPR003616 -
Glsi07g0734 1024 SUPERFAMILY FYVE/PHD zinc finger 426 488 IPR011011 -
Glsi07g0734 1024 Pfam SET domain 894 998 IPR001214 GO:0005515
Glsi07g0734 1024 CDD PWWP_AtATX3-like 247 348 - -
Glsi07g0734 1024 Pfam PHD-finger 428 482 IPR019787 -
Glsi07g0734 1024 FunFam Histone-lysine N-methyltransferase 858 1024 - -
Glsi07g0734 1024 Pfam PHD-zinc-finger like domain 646 758 - -
Glsi07g0734 1024 SMART PHD_3 428 480 IPR001965 -
Glsi07g0734 1024 SMART PHD_3 703 759 IPR001965 -
Glsi07g0734 1024 Pfam PWWP domain 249 344 IPR000313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0734 Glsi-ChrGlsi07 6468969 6477386 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0734 386 453 EF-hand Containing Proteins AT5G28340 58.824 5.71e-21 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Glsi07g0734 zf-HC5HC2H_2 1.1e-28 CL0390