Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0720 ATGGCCCCGTTCCTTTTCATCCTTCCAAATTTTAGGGTTGATACGTCCATTTTGTGCCTTGAATGGGACAATACGGCTTTGGTAGCATTGTTTAACTGTACATTTCGGGTCTCTGTGGCTTTCTTCAAAGGGCGCAATGGTCATTATCGTGCCAACATCTCCCATCCTCCACCTGTTCCTATTGGAGACAGAGTGATAAATTTTGTGGGGGGAAGTGGTCACGCGCCATTTTATGCTGTGGCTCTCACTACCTTACGTGTGGCTAATTTCCTCCTTGGACACTCTCGTAATTTCACGGTGCAATCGGCATTGTACCGTACGGTCCACCTTATAAATGTTGACGATACTCTCGTAGCAAAAACGGTTGCCACTGTAAATCTCTTCATGGAGCCACAAACTCCCCACCCCAGGGACGATGACTTAACCTCCACCACCAGCTGCACCACCACCGTCCCCACCGCCGTTGACGCTGCTGAGAAGTCTGATAACCCCCGAGGCGGAACGCGTCACCCGGTTTATCGGGGAGTTCGGAAACGCCGGTGGGGCAAATGGGTGTCGGAAATCCGGGAGCCACGCAAGAAATCTCGCATATGGCTCGGGTCTTTCGCGGTCCCGGAGATGGCGGCGAAAGCCTATGACGTCGCAGCGTACTGCCTAAAGGGCCGGAAAGCCCAGCTCAATTTTCCCGACGAGGTGGAGCAGTTGCCTCTGCCGTCCAGTTGCGCCGCCAGAGACATCCAGGCGGCGGCTGCCAAGGCTGCTCACACCATAAAAAGTTCGGCAAAGAAGAGTGGAGGTAGCATTATATCGAACTGCGACCAAGACGGCGACGGAGACAGTGGTGGCGATGATTTTTGGGGTGAGATTGAATTGCCAGAGCTGATGAATAGTGAGTGCTGTTGGAATTGTCCTAGTGGGCCCACTTGGAATTCCTCCGGCGATATCACGGGGTGGCCGGAGATGGAGCTTCCGCCGCAGCAACCATTCATGGCGTGTCTATAA 1002 0.5359 MAPFLFILPNFRVDTSILCLEWDNTALVALFNCTFRVSVAFFKGRNGHYRANISHPPPVPIGDRVINFVGGSGHAPFYAVALTTLRVANFLLGHSRNFTVQSALYRTVHLINVDDTLVAKTVATVNLFMEPQTPHPRDDDLTSTTSCTTTVPTAVDAAEKSDNPRGGTRHPVYRGVRKRRWGKWVSEIREPRKKSRIWLGSFAVPEMAAKAYDVAAYCLKGRKAQLNFPDEVEQLPLPSSCAARDIQAAAAKAAHTIKSSAKKSGGSIISNCDQDGDGDSGGDDFWGEIELPELMNSECCWNCPSGPTWNSSGDITGWPEMELPPQQPFMACL 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0720 333 Pfam AP2 domain 171 221 IPR001471 GO:0003700|GO:0006355
Glsi07g0720 333 MobiDBLite consensus disorder prediction 263 287 - -
Glsi07g0720 333 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 157 297 - -
Glsi07g0720 333 ProSiteProfiles AP2/ERF domain profile. 172 229 IPR001471 GO:0003700|GO:0006355
Glsi07g0720 333 Gene3D AP2/ERF domain 172 230 IPR036955 GO:0003700|GO:0006355
Glsi07g0720 333 SMART rav1_2 172 235 IPR001471 GO:0003700|GO:0006355
Glsi07g0720 333 FunFam Ethylene-responsive transcription factor 2 171 230 - -
Glsi07g0720 333 PRINTS Ethylene responsive element binding protein signature 211 231 IPR001471 GO:0003700|GO:0006355
Glsi07g0720 333 PRINTS Ethylene responsive element binding protein signature 173 184 IPR001471 GO:0003700|GO:0006355
Glsi07g0720 333 SUPERFAMILY DNA-binding domain 172 231 IPR016177 GO:0003677
Glsi07g0720 333 CDD AP2 173 230 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0720 Glsi-ChrGlsi07 6357828 6364050 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0720 143 333 AP2-EREBP Transcription Factor Family AT1G01250 55.941 3.30e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi07g0720 AP2 1.3e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi07g0720 07 6357828 6364050 Glsi07g0720 07 6357828 6364050 ECH