Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0717 ATGGCACATCTGGAGTGTAATCTCAGAGGCCCGGCGAGTTCTCATGCGGAAACAGGCGTGGGAGATGACGATCTGTATACAGAACTATGGAAGTTGTGTGCAGGGCCTTTGGTGGATGTTCCTCGTGCTGCGGAGAGAGTTTTCTACTTCCCTCAGGGTCACATGGAACAATTGCAAGCATCAACGAATCAGGAATTAAACCAGCAAATTCCCCATTTCAATCTTCCATCTAAGATTCTATGTCGTGTTATGAACATTCAGTTATTGGCGGAACAAGAAACTGATGAAGTTTATGCCCGTATCACTTTGCTTCCAGAATCAGATCAAACTGAGCCTGCAAGTCCGGATTCATGTCCACCCGAAAACCAGAAACAAACGTTTCACTCATTTTGCAAGATATTAACGGCCTCTGATACCAGTACACATGGAGGATTTTCAGTTCTGCGGAAACATGCTACTGAGTGCTTGCCGCAGCTGGACATGACCCAAGCAACCCCAACTCAGGAGTTGGCGGCCAGGGATCTTCATGGGACTGAGTGGAAGTTTAAGCATATATTCAGAGGTCAGCCAAGGAGGCACTTGCTTACAACTGGCTGGAGTACATTTGTTACGAACAAAAGATTGGTAGCAGGAGATGCTTTTGTGTTTCTAAGGGGAGAGAATGGGGAACTGAGAGTTGGTGTTAGGCGTCTGGCTCGGCAACAGAGTCCGATGCCTTCATCTGTGATATCGAGTCAGAGCATGCATCTTGGAGTGCTTGCCACTGCCTCCCATGCTGTACTGACTGGCACTATGTTTGTGGTTTATTACAAACCAAGGACTAGCCAGTTCATAGTTGGTTTGAACAAATATCTGGAGGCAGTCAGCAATAAGTTTTCAGTTGGCATGCGTTTCAAGATGAGATTTGAGGGAGAGGACTCACCTGAGAGAAGGTTTTCGGGTACTATTGTTGGGGTTGGGGATTCTTCTCCCGAGTGGTCAGATTCTAAGTGGCGGTCATTGAAGGTTCAATGGGATGAACCAGCAACAATTCCAAGGCCGGAGAGGGTTTCCCCGTGGGAGATAGAGCCTTTTGTAGCTTCTACTGCTTTAAATGTTACACATCCTGCAGTGAAGAACAAAAGGCTCCGGCCTGCTGATGTTCCGTCTTCTGAAATTACTCCCAATTCAGCTGTTTCGGCTTTCTGGTATCATGGATCATCCCAGCCCCATGAACTTACACAATTGGGTGGTGGTTCTGAAGTCCAAAGCAATGAAAGCCAGGTTGTATGGTCTCTGAGGCAGAAAGAAATTAACAGCAATCCTATGAATACTAACAATAGCTCCAGCAGCTCCAGAGTCCGAGTGGAAGGAATATGGCCTGCTTCTCCACCTTTAAATGCCTCTTCAAACTTTTTTCCTGACCCAAGAAACAACAAAGCTCTTGTAGCACAAGCTTCTATCTCTGGTTATCCTCCTGTTTTATGTAGACCAAATGATGGCCTGGGATATGATCAAGTGGAAAATGAGAAAAAGACTGAGAATTCTATAGATTGCTGGTTATTTGGAGTTAATTTGACTAAAAATTCAAACACTGGTACTCCCTTGGAGAAAGAACTCGGATGCCCAACCATTATTCCTAGTGGTCCCAAAGAATCTATCCCTCCTGCTGCTGCATGTGAAACTGAGAGGAGTCAGAACCCCAATAATACACTGTCCCAAAAGGAGCAAAAGCAAGTTGATGCATCACCAAACGAGAGGCTGAGTAAGCAGGTCTCTGCACTGTCCATGAGGACTCGTACTAAGGTGCAAATGCAAGGTGTGGCTGTTGGTCGTGCAGTTGACTTGACCATGTTGAATGGGTATGATGATCTCATTGGTGAGCTTGAGAAATTGTTTGACATTAAAGGAGAGCTTTGCCCACAGAACAAGTGGGCAGTTACTTTTACCGATGATGAAAATGACATGATGCTTGTGGGTGATGATCCATGGCCGGAGTTCTGTAATATTGTTAAGAGGATCTTCATTTATTCAAGTGAAGAGGTGAAGAAGATGAATCCAAAGTTCAAGCTTCCTGCTTCTTCATCAGAGGGTGAAGAGACAATTGTGAGCCTGGATTTGCAAAATAGGGATGAAACTGAATAA 2124 0.452 MAHLECNLRGPASSHAETGVGDDDLYTELWKLCAGPLVDVPRAAERVFYFPQGHMEQLQASTNQELNQQIPHFNLPSKILCRVMNIQLLAEQETDEVYARITLLPESDQTEPASPDSCPPENQKQTFHSFCKILTASDTSTHGGFSVLRKHATECLPQLDMTQATPTQELAARDLHGTEWKFKHIFRGQPRRHLLTTGWSTFVTNKRLVAGDAFVFLRGENGELRVGVRRLARQQSPMPSSVISSQSMHLGVLATASHAVLTGTMFVVYYKPRTSQFIVGLNKYLEAVSNKFSVGMRFKMRFEGEDSPERRFSGTIVGVGDSSPEWSDSKWRSLKVQWDEPATIPRPERVSPWEIEPFVASTALNVTHPAVKNKRLRPADVPSSEITPNSAVSAFWYHGSSQPHELTQLGGGSEVQSNESQVVWSLRQKEINSNPMNTNNSSSSSRVRVEGIWPASPPLNASSNFFPDPRNNKALVAQASISGYPPVLCRPNDGLGYDQVENEKKTENSIDCWLFGVNLTKNSNTGTPLEKELGCPTIIPSGPKESIPPAAACETERSQNPNNTLSQKEQKQVDASPNERLSKQVSALSMRTRTKVQMQGVAVGRAVDLTMLNGYDDLIGELEKLFDIKGELCPQNKWAVTFTDDENDMMLVGDDPWPEFCNIVKRIFIYSSEEVKKMNPKFKLPASSSEGEETIVSLDLQNRDETE 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0717 707 Pfam Auxin response factor 256 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Glsi07g0717 707 SUPERFAMILY DNA-binding pseudobarrel domain 121 259 IPR015300 -
Glsi07g0717 707 Gene3D - 587 679 - -
Glsi07g0717 707 MobiDBLite consensus disorder prediction 553 580 - -
Glsi07g0717 707 FunFam Auxin response factor 586 679 - -
Glsi07g0717 707 FunFam Auxin response factor 291 362 - -
Glsi07g0717 707 Pfam B3 DNA binding domain 130 230 IPR003340 GO:0003677
Glsi07g0717 707 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 24 679 IPR044835 GO:0003677|GO:0006355|GO:0009725
Glsi07g0717 707 Gene3D - 291 363 - -
Glsi07g0717 707 ProSiteProfiles PB1 domain profile. 591 683 IPR000270 GO:0005515
Glsi07g0717 707 Pfam AUX/IAA family 563 627 IPR033389 -
Glsi07g0717 707 Pfam AUX/IAA family 636 680 IPR033389 -
Glsi07g0717 707 Gene3D - 127 231 IPR015300 -
Glsi07g0717 707 ProSiteProfiles B3 DNA-binding domain profile. 130 232 IPR003340 GO:0003677
Glsi07g0717 707 SMART B3_2 130 232 IPR003340 GO:0003677
Glsi07g0717 707 CDD B3_DNA 128 230 IPR003340 GO:0003677
Glsi07g0717 707 MobiDBLite consensus disorder prediction 682 707 - -
Glsi07g0717 707 MobiDBLite consensus disorder prediction 540 580 - -
Glsi07g0717 707 FunFam Auxin response factor 128 232 - -
Glsi07g0717 707 SUPERFAMILY CAD & PB1 domains 589 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0717 Glsi-ChrGlsi07 6323830 6327885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0717 21 684 B3 DNA Binding Superfamily AT4G23980 57.973 0.0 691
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Glsi07g0717 B3 5e-21 CL0405