Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0706 ATGGGAAGAGCTCCTTGTTGTTCCAAAGTTGGCATGCACAGAGGTCCATGGACTCCTAGAGAAGACGCATTGCTCACCAAGTATATTCAAGCTCATGGCGAAGGCCAATGGCGATCCCTACCGAAAAGAGCTGGACTTCTTAGATGTGGGAAAAGTTGCAGACTGAGATGGATGAACTATCTGAGACCAGACATAAAGAGAGGGAACATAACTCCAGAAGAAGATGACTTAATAATGAGAATGCATTCACTTCTGGGAAACAGATGGTCCCTCATCGCAGGAAGACTACCAGGAAGAACAGATAATGAAATCAAGAACCACTGGAATACCCATCTCAGTAAAAGGCTCAAAAACCAAGGTACTGATCCGAGCACACACAAGAAATTATCAGATAATTCTGACCAGAGGAAGAAGAAGAAGCAGAAGAAGAATGACAAGAACAAAAAAAACGTAGAAGAAGAACCAGAGAAGACTATAGTTTATCTACCAAAACCCATTAGAGTTAAAGCCTTGTCAACGCCCAGAAGAACTGATGATGATAGTAATAATTTTGCTATGGATTATTCAAACTCAGCTAGTGGATCTACAAGCCAAGAAGATCAGAAGGAAAAGGTTCTTTGGGGGGTTGGGAATTACGATGGAGAAAATGATGGGTTTGGGTTTCTTATTGAAGACAATGACTTAGTCAACGGATCTGATGATATGGAAGGCCAATCTGACTTTCCTCCCACGGCGGATCATGGCACGCTAGAGAAGCTCTACGAAGAGTACTTGCAGCTACTGAATAATGACGAAAATCAAGAGGAGTTGGAGTCTTTTGCTGAATCTTTATTGGTTTGA 840 0.4202 MGRAPCCSKVGMHRGPWTPREDALLTKYIQAHGEGQWRSLPKRAGLLRCGKSCRLRWMNYLRPDIKRGNITPEEDDLIMRMHSLLGNRWSLIAGRLPGRTDNEIKNHWNTHLSKRLKNQGTDPSTHKKLSDNSDQRKKKKQKKNDKNKKNVEEEPEKTIVYLPKPIRVKALSTPRRTDDDSNNFAMDYSNSASGSTSQEDQKEKVLWGVGNYDGENDGFGFLIEDNDLVNGSDDMEGQSDFPPTADHGTLEKLYEEYLQLLNNDENQEELESFAESLLV 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0706 279 Coils Coil 250 270 - -
Glsi07g0706 279 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Glsi07g0706 279 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 215 - -
Glsi07g0706 279 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Glsi07g0706 279 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Glsi07g0706 279 CDD SANT 16 61 IPR001005 -
Glsi07g0706 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Glsi07g0706 279 MobiDBLite consensus disorder prediction 170 201 - -
Glsi07g0706 279 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Glsi07g0706 279 MobiDBLite consensus disorder prediction 120 138 - -
Glsi07g0706 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Glsi07g0706 279 FunFam Myb transcription factor 11 67 - -
Glsi07g0706 279 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Glsi07g0706 279 MobiDBLite consensus disorder prediction 183 201 - -
Glsi07g0706 279 SMART sant 13 63 IPR001005 -
Glsi07g0706 279 SMART sant 66 114 IPR001005 -
Glsi07g0706 279 CDD SANT 71 112 IPR001005 -
Glsi07g0706 279 Gene3D - 71 157 - -
Glsi07g0706 279 MobiDBLite consensus disorder prediction 110 157 - -
Glsi07g0706 279 Gene3D - 14 66 - -
Glsi07g0706 279 FunFam MYB transcription factor 68 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0706 Glsi-ChrGlsi07 6201648 6202857 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0706 4 132 MYB Transcription Factor Family AT3G13540 72.868 2.65e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi07g0706 Myb_DNA-binding 1.6e-13 CL0123