Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0700 ATGATGGTAGTAGAAGCAGTGACCAGTGCCGCTACTGGTCCTACTTCAGAAGTCATTTCTCAGATTATAGATATTATTGCTCAGTTAATACTTGAAGCTAACAGCGTCCTTGTGAAGAAGGATAGCTTTAAGAAACTTGCAGCTTACTTGGAAAGAATTGTACCCATCTTAAAAGAATTGAGGAAGAATAAAGTCAGTAATTCTGAGACTTTAAACCATGCCATTGAGGTTCTGAATCGTGAAATTAGAGATGCAAAGCAATTGATTCTTGAATGCAGCAAGAGAAGCAAGGTATACCTCCTAGTGAACTGCAGGTCAATTATTAAGCGTATACAGAAGACCACAAGTGAGATCCGCTGGGCACTTGGTCTTCTTCCATTGGCCACGTCAGGTCTTTCGTCTGGAATAATTGAAGAAATTGGGAAGCTCTGTGACAATATGCAGAAAGCTGATTTTAAGGCAGACATAGCAGAAGAGGAGATTTTGGAGAAAATTGAGTCCGGGATACAGGAAAAGACTGTTGATCGCTCCTATGCCAATAATTTGCTTATCCTCATAGCAGAGGCTATTGGGACTACTACTGAGAGGTCAACAATGAAGAAGGAACTAGAAGAATTCAAAGGTGAAATTGAAAATGCCCGCCTGAGGAAAGACCTGGCTGAAGCTATGCAGATGGATCAGATTATTGCTTTGTTGGAAAGAGCTGACGCAGCCTCATCACCTCAGGAAAAGGAACTCAGGTATTTTTCCAAGCGCAAATCTTTGGGTTGTCAACCATTGGAACCTCTTCAATCATTTTATTGCCCCATAACCCTGGATGTTATGGTGGACCCAGTGGAAACTTCATCAGGACAGACATTTGAGAGAAATGCCATAGAAAAATGGTTTGCTGAAGGAAACAAATTGTGTCCTCTGACCATGACTCCCTTGAACACATCAATTTTGCGACCTAACAAACACTTGAAACAATCAATAAAAGAATGGAAGGATAGAAATACCATGATTACAATTGCTTCAACGAAAGAAAAACTCCATTCTGGAGATGATGATGAGGTACTGCATTGTCTGGGAACTCTACAAGATTTGTGTGAACAAAGTGACGAGCACAGGGAATGGCTGATGCTGGAGAATTACATACCAGTTCTTATCCAAATTCTTGGTGCTAGAAACCATGATGTAAGGAACCATGCTCTAATCATCCTTTGCATGTTGGCAAAGGATAGTGAGGATGCCAAGGAAAGAATTACAAATGTTGATAATGCGGTTGAATCTATTGTTCGTTCTCTTGGGCGTCGTGCGGAGGAAAGGAAGATGGCAGTGGCATTACTGTTGGAATTATCCAAATATGATTCACTACAAGAATACATTGGAAAGGTTCAAGGTTGCATACTACTGCTGGTGACTATGTCCAGCAGCGATGATGATCAAGCTGCCAGAGATGCAATGGAGCTACTGGAGAATCTTTCATACTCTGATCAGAATGTTGTACAGATGGCAAGGGCAAATTATTTCAAGCATTTTCTGCAGCGTCTTTCCACAGGACCAGATGATGTGAAAAAGACTATGGCAACAACTCTAGCAGAATTGGACTTAACTGACCACAATAAAGAGTCCTTGTTTGAAGGTGGCGTACTGGATCCGCTTCTTCAGTTGGTCTCACATGATGATGTTCAAGTGAAAACACTGGCCATTAAAGCTTTTCAGAATCTATCCAGTTTAAAGAAAAATGGACAAGAGATGATTCGACAAGGTGCAGTGCGCCCGATACTTGACCTTCTATTCCATCATGGCATCCCATCATTAAGTTTGCAGGAACATGTAGCAGCCATAATTGTGCAACTTGCTGCATCAACTATCTCTAAAGATGGCCAGACACCAGCTTTTTTATTAGAATCTGATGAAGATGTTTTTAAACTCTTCTCTTTGATTAATTTCACGGGGCCTGATGTGCAACAAAACATTATACAGGCCTTTTATACCTTGTGTCATTCGCCCTCAGCTTCATATATCCGAACCAAGCTAAGAGAGTGCTCGGCTGTTGAAGTATTGGTTCCGCTGTGTGAGCAGGAAAACCTAAACCTACGAGCTAGTGCTGTAAAACTGTTTTCTTGCTTGGTAGAAAGTTGCGATGAAGCTAGCATCCAGGAAAACGTAAATCAGAAATGCATCGAAACTTTACTCCGGATTCTGAGATCTTCTGATGATGAAGAGGAAATTGCTTCTGCTATGGCCGTAGTATGCTATCTTCCAAAAATCCACCAGATCACTCAGTGGCTTCTGGATGCTGGTACACTGCCAATCATATATAATTATATCCAAGATGCAAAGGACAAAGACAGGCAAAAGAGCAAGTTAGTAGAGAATGCTGTTGGTGCCTTGATTCGTTTCACAGTTCCAACAAACTTGGAATGGCAAAAGAGTGCAGCTGAAACTGGTATTATAACTGTTCTAGTACAGTTAGTTGAATGTGGAACCACATTAACAAAACAACGAGCAGCATTGTCTCTTGCTCAATTTTCAAAGAGTTCACTTGAGCTGAGCAGGCCAATATCCAAACACAAGGGCTGTTGGTGCTTCTCTGCTCCAGCAGAAATCAGATGCTCGGTTCATGGAGGAATATGTACTGTCGAGTCATCATTTTGCCTTGTTGAGGCTGATGCAGTGAGGTCACTGGCAAGGACTCTTGGAGAATCTGATCCGGGAGCTTGTGAGGCTTCTTTAGATGCACTATTGACTTTAGTTGAAGGCGAAAGACTCCAGAGCGGTAGTAAAGTGCTTGCAGAAGCAAACACCATACCACTAATAATAAAATGTCTTAATTCTCCTTCCCCTGGACTACAGGAGAAGTCTCTTCGTGCTTTGGAAAGGATTTTTCGGCTATTGGAGTTCAAACAGCTGTATGGATCTTCAGCTCATATGGCTCTGGTCGACTTAACTCAACGGGGTAACGATAACTTGAGATCTATGGCAGCTAGAATATTGGCACATCTAAACGTGCTTCATTATCAGCAATTTGGGAGCATATTTGCGATGATGAGGCCAGTTTTCGTTGGGAACTTTGGGTACGATACCCGTCAATCGGAACTCGAACGCTTGTTTGCCAAGTATGGGAGGATTGAGCGCGTGGACATGAAATCTGGGTTTGCTTTTGTCTATTATGAGGATGAGCGTGATGCTGAAGATGCAATTCATGCGCTTGACAATTTTCTGTATGGTTATGACAAGCGAAGGTTGTCTGTGGAGTGGGCTAGAGGTGAACGCGGCCATCCTTGTGATGGGCCAAGAGCAAACCAAAGGCCCACCAAAACACTCTTTGTGATTAACTTTGATCCAATTCGTACTAGAGTTCGTGATATAGAAAGGCACTTTGAACCATATGGGAAGGTTCTTCATGTACGAATTCGTCGTAACTTTGCATTTGTGCAGTTTGAAACACAAGAAGATGCTACTAAAGCTCTTGAGAGTACACATATGAGCAAGCTACTGGACAGGGTGGTGTCTGTGGAGTATGCTCTTAGGGAAGATAGTGAGAGGGGTGACAAATATTATGATAGTCCTAGAAGAGGGGGTTATGGGAGATCGCCCAGTCCAGTTCACCGTAGGCGATCAAGTCCTGACTATGGTCCTGCACGCAGCTCATTGGATGGCAGATACAATGGAGCAGCATATGATAGGCGTAGGAGCCCTGATTATGGCAGGCCAAGGAGCCCTGATTATGGAAGGCGCAGAAGTCCTGAATATGGTAGATTTCGCAGCCGTTCGCCTATCCGAAGGTCAAGAACTTAG 3786 0.4284 MMVVEAVTSAATGPTSEVISQIIDIIAQLILEANSVLVKKDSFKKLAAYLERIVPILKELRKNKVSNSETLNHAIEVLNREIRDAKQLILECSKRSKVYLLVNCRSIIKRIQKTTSEIRWALGLLPLATSGLSSGIIEEIGKLCDNMQKADFKADIAEEEILEKIESGIQEKTVDRSYANNLLILIAEAIGTTTERSTMKKELEEFKGEIENARLRKDLAEAMQMDQIIALLERADAASSPQEKELRYFSKRKSLGCQPLEPLQSFYCPITLDVMVDPVETSSGQTFERNAIEKWFAEGNKLCPLTMTPLNTSILRPNKHLKQSIKEWKDRNTMITIASTKEKLHSGDDDEVLHCLGTLQDLCEQSDEHREWLMLENYIPVLIQILGARNHDVRNHALIILCMLAKDSEDAKERITNVDNAVESIVRSLGRRAEERKMAVALLLELSKYDSLQEYIGKVQGCILLLVTMSSSDDDQAARDAMELLENLSYSDQNVVQMARANYFKHFLQRLSTGPDDVKKTMATTLAELDLTDHNKESLFEGGVLDPLLQLVSHDDVQVKTLAIKAFQNLSSLKKNGQEMIRQGAVRPILDLLFHHGIPSLSLQEHVAAIIVQLAASTISKDGQTPAFLLESDEDVFKLFSLINFTGPDVQQNIIQAFYTLCHSPSASYIRTKLRECSAVEVLVPLCEQENLNLRASAVKLFSCLVESCDEASIQENVNQKCIETLLRILRSSDDEEEIASAMAVVCYLPKIHQITQWLLDAGTLPIIYNYIQDAKDKDRQKSKLVENAVGALIRFTVPTNLEWQKSAAETGIITVLVQLVECGTTLTKQRAALSLAQFSKSSLELSRPISKHKGCWCFSAPAEIRCSVHGGICTVESSFCLVEADAVRSLARTLGESDPGACEASLDALLTLVEGERLQSGSKVLAEANTIPLIIKCLNSPSPGLQEKSLRALERIFRLLEFKQLYGSSAHMALVDLTQRGNDNLRSMAARILAHLNVLHYQQFGSIFAMMRPVFVGNFGYDTRQSELERLFAKYGRIERVDMKSGFAFVYYEDERDAEDAIHALDNFLYGYDKRRLSVEWARGERGHPCDGPRANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLHVRIRRNFAFVQFETQEDATKALESTHMSKLLDRVVSVEYALREDSERGDKYYDSPRRGGYGRSPSPVHRRRSSPDYGPARSSLDGRYNGAAYDRRRSPDYGRPRSPDYGRRRSPEYGRFRSRSPIRRSRT 1261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0700 1261 CDD MLKL_NTD 26 130 - -
Glsi07g0700 1261 Gene3D - 434 632 IPR011989 -
Glsi07g0700 1261 Coils Coil 68 95 - -
Glsi07g0700 1261 MobiDBLite consensus disorder prediction 1177 1261 - -
Glsi07g0700 1261 Gene3D - 15 129 IPR036537 GO:0007166
Glsi07g0700 1261 Gene3D - 343 433 IPR011989 -
Glsi07g0700 1261 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 16 1003 - -
Glsi07g0700 1261 SUPERFAMILY ARM repeat 341 997 IPR016024 -
Glsi07g0700 1261 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 543 585 IPR000225 GO:0005515
Glsi07g0700 1261 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1102 1173 IPR000504 GO:0003723
Glsi07g0700 1261 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1104 1166 IPR000504 GO:0003723
Glsi07g0700 1261 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1015 1070 IPR000504 GO:0003723
Glsi07g0700 1261 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 18 120 IPR008808 -
Glsi07g0700 1261 ProSiteProfiles U-box domain profile. 261 335 IPR003613 GO:0004842|GO:0016567
Glsi07g0700 1261 Coils Coil 196 223 - -
Glsi07g0700 1261 Pfam U-box domain 266 332 IPR003613 GO:0004842|GO:0016567
Glsi07g0700 1261 Gene3D - 633 856 IPR011989 -
Glsi07g0700 1261 CDD RRM1_AtRSp31_like 1013 1084 - -
Glsi07g0700 1261 Gene3D - 866 1008 IPR011989 -
Glsi07g0700 1261 SUPERFAMILY RING/U-box 258 334 - -
Glsi07g0700 1261 SUPERFAMILY RNA-binding domain, RBD 1013 1176 IPR035979 GO:0003676
Glsi07g0700 1261 Gene3D - 1094 1184 IPR012677 -
Glsi07g0700 1261 Gene3D - 1010 1091 IPR012677 -
Glsi07g0700 1261 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1013 1085 IPR000504 GO:0003723
Glsi07g0700 1261 CDD RRM2_AtRSp31_like 1103 1172 - -
Glsi07g0700 1261 CDD RING-Ubox_PUB 266 315 IPR045210 -
Glsi07g0700 1261 SMART Ubox_2 265 328 IPR003613 GO:0004842|GO:0016567
Glsi07g0700 1261 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 342 IPR013083 -
Glsi07g0700 1261 SMART arm_5 709 751 IPR000225 GO:0005515
Glsi07g0700 1261 SMART arm_5 573 616 IPR000225 GO:0005515
Glsi07g0700 1261 SMART arm_5 667 707 IPR000225 GO:0005515
Glsi07g0700 1261 SMART arm_5 449 490 IPR000225 GO:0005515
Glsi07g0700 1261 SMART arm_5 919 959 IPR000225 GO:0005515
Glsi07g0700 1261 SMART arm_5 532 572 IPR000225 GO:0005515
Glsi07g0700 1261 SMART arm_5 408 448 IPR000225 GO:0005515
Glsi07g0700 1261 SMART arm_5 875 915 IPR000225 GO:0005515
Glsi07g0700 1261 SMART arm_5 366 406 IPR000225 GO:0005515
Glsi07g0700 1261 FunFam Serine/arginine-rich splicing factor RS31 1094 1184 - -
Glsi07g0700 1261 MobiDBLite consensus disorder prediction 1220 1253 - -
Glsi07g0700 1261 SMART rrm1_1 1103 1169 IPR000504 GO:0003723
Glsi07g0700 1261 SMART rrm1_1 1014 1081 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0700 Glsi-ChrGlsi07 6143230 6153276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0700 264 1009 U-box Gene Family AT1G76390 28.426 2.53e-63 230