Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0692 ATGGCACACACTTCCAAAAACATTCCCTACCACCCATCCTCAACCTCAAGGGCTTTAAAGTTCCAGCAGGCCACTGTAAATCCCCACAAGATGTTGGATCAAATTCATATGGAATATTCTCATTCAGCAGAAGTTGCAGAAGCAGAAACTTATAGCAGCACAACTGCATCCCCGGCAGCCGTGAGAAAGAGGAAGAGCAAAAACCAGAGAAGGTTCAGTGATGACCAAATCAAATCATTGGAATCCATGTTCGAGACAGAGTCAAGACTCGAACCTAGAAAGAAGTTGCAGTTGGCAAGAGAGCTTGGGTTGCAGCCAAGGCAGGTTGCTATATGGTTCCAGAATAAGAGAGCTAGATGGAAGTCAAAGCAGATTGAAAGAGACTACAGCATACTTCGAGCTAACTATAGCAGCTTGGCTTCACGGTTTGAAGCTCTGAAGAAGGAGAAGCAGGCATTGCTAATACAGTTGCAGAAGTTGAATGATCTAATACAGATGCCAAAAGAGCAAACTCAGTGTTATCCGCAAATTAAACCAGCAAACAGCATAGATAGTGAATCAGAAAATGGAGACTCCATCAGAGGTGAACCTGAGGTCAAGACAAGCTCTTCAATAGAAAGATCAGAACACCTACTTGGTGTTCTCTCAGATGATGACAGCAGCATAAAGGCAGAATACTTTGGCCTGGAAGATGAACCTGCCCTTCTGAATTTTGTCGAGCATGCTGATGATTCGTTGAATTCAGCACAAGATTGGGGTACTTTTGACTCCGATAACCTCTTAGGCCAGTCCGGTTGTGGTTACCAATGGTGGGATTTCTGGTCCTGA 828 0.4432 MAHTSKNIPYHPSSTSRALKFQQATVNPHKMLDQIHMEYSHSAEVAEAETYSSTTASPAAVRKRKSKNQRRFSDDQIKSLESMFETESRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQIERDYSILRANYSSLASRFEALKKEKQALLIQLQKLNDLIQMPKEQTQCYPQIKPANSIDSESENGDSIRGEPEVKTSSSIERSEHLLGVLSDDDSSIKAEYFGLEDEPALLNFVEHADDSLNSAQDWGTFDSDNLLGQSGCGYQWWDFWS 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0692 275 Pfam Homeobox associated leucine zipper 123 164 IPR003106 GO:0006355|GO:0043565
Glsi07g0692 275 ProSiteProfiles 'Homeobox' domain profile. 63 123 IPR001356 GO:0003677
Glsi07g0692 275 MobiDBLite consensus disorder prediction 50 72 - -
Glsi07g0692 275 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 56 202 IPR045224 GO:0003700
Glsi07g0692 275 SUPERFAMILY Homeodomain-like 51 124 IPR009057 -
Glsi07g0692 275 ProSitePatterns 'Homeobox' domain signature. 98 121 IPR017970 GO:0000981|GO:0006355
Glsi07g0692 275 Gene3D - 50 126 - -
Glsi07g0692 275 Pfam Homeodomain 67 121 IPR001356 GO:0003677
Glsi07g0692 275 PRINTS Lambda-repressor HTH signature 94 103 IPR000047 GO:0003677
Glsi07g0692 275 PRINTS Lambda-repressor HTH signature 103 119 IPR000047 GO:0003677
Glsi07g0692 275 MobiDBLite consensus disorder prediction 189 205 - -
Glsi07g0692 275 Coils Coil 143 163 - -
Glsi07g0692 275 FunFam Homeobox-leucine zipper protein ATHB-7 50 123 - -
Glsi07g0692 275 SMART HOX_1 66 127 IPR001356 GO:0003677
Glsi07g0692 275 CDD homeodomain 67 124 IPR001356 GO:0003677
Glsi07g0692 275 MobiDBLite consensus disorder prediction 176 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0692 Glsi-ChrGlsi07 6069901 6070839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0692 68 275 Homeobox Transcription Factor Family AT2G46680 54.222 3.39e-66 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Glsi07g0692 Homeodomain 1.6e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi07g0692 07 6069901 6070839 Glsi07g0692 07 6069901 6070839 ECH