Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0687 ATGGAGGATTTGATAATCTCTTCTTCTTCGTCTTCATCGTTGGTCTCTCTGTCCCACGAAAACCCACCAACCCTTCAGCAAAAGCTTCAATTTTTACTTCAAAGTCAACCCGATTGGTGGGTCTATGCCATTTTCTGGCAGACATCAAACGACGACAATGGCAACTTCGTATTAAGCTGGGGAGAAGGCCATTTCCAAGGCACCAAAGACCCTTCCCCTAGGTTCACCTCCACCACCACCCACCAGCTCCATGATCCCATTTCTTCAGAGCTTCATTCTGAGCGGAAAAAGTTCATCAAAGGTATCCAGTCACTGCTCGACGACAACCCAAGCGGCGCCATCGACGACAACCTCAACGACTGCGAATGGTTCTACGTCATGTCGTTGACTCGCACTTTCTCTGTCGGTGATATTGCCTCCTCCCTCCCCGGCAAGGCCTTCGCTTCTGGTTCCCTGCTTTGGTTAAACAGTGAGCATAATCAGCTTCAATTTTGCAATTGTGAAAGGGCCAAAGAGGCTTCCATGCACGGGATTCGAACTATGATCTGCATCCCGACAAGCTATGGAGTTCTCGAAATGGGTTCCTCCGACATAGTCGGAGAAAACTGGGGTCTGGTCCAACATGCCAAATCTCTGTTCGGATCGTCGGACCTTATCGGCTCGGCGCCACCCAAGCAACAAAACCCAGTTCAATTCTTCGACGATCAGAACATCTCCTTCGCCGACATCGGCATTATGGCCGGAATACAAGAAGAAGAAAACAATTCCCAAGACGAAAAACCAAAGAGAAAGGAAACAGAACCACTGAAAAAGAAAGACTCGGGGCTCAAATTCGGATCTTCCTATGTAGATTCAGAGCATTCCGATTCGGATTGTCCACTCATGGAAAAAATACCACCCAAGAGGAGGGGAAGAAAGCCGGGGCTGGGCCGTGAAACGCCGTTGAACCACGTGGAGGCGGAGCGGCAACGGCGGGAGAAGCTGAACCACCGATTCTACGCGTTAAGAGCGGTGGTTCCGAACGTTTCGAGAATGGACAAAGCTTCTCTGTTATCAGATGCGGTGGCCTACATCAACGAACTGAAAGGGAAGATCGAGGAATTGGAATCGCAGCTTCAGAGGGACTCTGGGAACAAGAAGAGGGTGAAGTTGGAAACGACGGACACCATGGATCGCCACAGCACGACGACTTCAACAACGGTGGACCAATGCGGGTCGGGTGGGGTTGAGGTGGAGGTTAAGATTATAGGAACAGATGCTATGGTGAGGGTTCAATCGGAGAGCACGAACCACCCAGGGGCAAGGTTGATGGGTGCATTAAGAGACTTGGAGTTTCAGGTCCACCATGCGAGCATGTCCTGTGTTAATGAGATTATGCTCCAAGATATCGTTGTTAAGATTCCCGAAGGGTTGAGAAACGAAGAGGGTCTTAAATCTGCAATTCTCAGGAGATTAAATCACTAG 1464 0.4973 MEDLIISSSSSSSLVSLSHENPPTLQQKLQFLLQSQPDWWVYAIFWQTSNDDNGNFVLSWGEGHFQGTKDPSPRFTSTTTHQLHDPISSELHSERKKFIKGIQSLLDDNPSGAIDDNLNDCEWFYVMSLTRTFSVGDIASSLPGKAFASGSLLWLNSEHNQLQFCNCERAKEASMHGIRTMICIPTSYGVLEMGSSDIVGENWGLVQHAKSLFGSSDLIGSAPPKQQNPVQFFDDQNISFADIGIMAGIQEEENNSQDEKPKRKETEPLKKKDSGLKFGSSYVDSEHSDSDCPLMEKIPPKRRGRKPGLGRETPLNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVAYINELKGKIEELESQLQRDSGNKKRVKLETTDTMDRHSTTTSTTVDQCGSGGVEVEVKIIGTDAMVRVQSESTNHPGARLMGALRDLEFQVHHASMSCVNEIMLQDIVVKIPEGLRNEEGLKSAILRRLNH 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0687 487 MobiDBLite consensus disorder prediction 253 274 - -
Glsi07g0687 487 MobiDBLite consensus disorder prediction 376 390 - -
Glsi07g0687 487 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 25 213 IPR025610 -
Glsi07g0687 487 SMART finulus 318 367 IPR011598 GO:0046983
Glsi07g0687 487 MobiDBLite consensus disorder prediction 376 404 - -
Glsi07g0687 487 CDD bHLH_AtAIB_like 310 374 - -
Glsi07g0687 487 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 304 373 IPR036638 GO:0046983
Glsi07g0687 487 PANTHER MYC 13 484 IPR045084 GO:0003700|GO:0006355
Glsi07g0687 487 Pfam Helix-loop-helix DNA-binding domain 316 361 IPR011598 GO:0046983
Glsi07g0687 487 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 312 361 IPR011598 GO:0046983
Glsi07g0687 487 MobiDBLite consensus disorder prediction 251 314 - -
Glsi07g0687 487 MobiDBLite consensus disorder prediction 289 314 - -
Glsi07g0687 487 Coils Coil 351 385 - -
Glsi07g0687 487 Gene3D - 311 376 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0687 Glsi-ChrGlsi07 6015597 6017060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0687 1 485 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 34.429 6.08e-92 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi07g0687 bHLH-MYC_N 1.2e-50 CL0161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi07g0687 07 6015597 6017060 Glsi07g0687 07 6015597 6017060 ECH