Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0682 ATGCTTGCTCAAGAAAGTTTAAAGGCTTTGGGTGGATTGGGTTTGCTGTCTCTCGGGGGAAAATACATTCTCAGGAGAGTTTTTGAGGACATAGCTGTTGTCCCTCTCTTAGTCATTCTTCCAATACTAGAGAGCCAGGCAGTGAGTAAGTTGGTTCAAATTAAATCTTGTGAAGATGCCAGGCAAAGTATTAGAAGAGCCCGACAGAAGGTGACTGTACCTGTCTATGGGCTGGCCAATATCTTTGGTCTGCTTGTGGCTTTCTGGGGTAATTCAGATAAATCTGAAACACCATTACCTAGTTTTCGTGGAGTTGGGTTAGGAGTGACCATTTTCCACTTCGCAAAATCAGACATTTTAGCAGAAGCACGAACCTCATTTCAGCTCCATAACAATTACCCACACAATAATCCACTTGAAAGATCGGAACGTTCGAGTTTGATCGAAAGTTGGAAAGCAAAAATGAGCAGCATGAAAGCACAGAAAGCTCGGACCCGTGTTGGGAAATACGAGCTGGGTAAAACCATTGGGGAGGGTAGCTTTGCCAAGGTCAAGTTTGCGAGAAACGTCGAGACAGGGGAAAGCGTCGCCATCAAAATCCTCGACCGTAACCATGTTCTCCGCCACAAGATGATGGAACAGCTGAAGAGAGAAATTTCAACGATGAAGCTGATCAAACATCCGAATGTTGTCAAAATATTTGAGGTAATGGCAAGCAAAACAAAGATTTACATTGTCCTGGAGTTAGTTGGTGGAGGAGAACTATTTGACAAAGTCGCTAATAATGGGAGACTTAAAGAGGATGAAGCAAGGCAATATTTCCAACAACTTATTAATGCTGTTGATTACTGCCATAGTAGAGGCGTGTTTCACAGAGATTTGAAGCCCGAGAATCTTCTTTTGGATTCAAATGGTGTTCTTAAAGTTTCAGATTTTGGATTGAGTACATACTCACAGCAAGATGATGCACTGCTACGCACTGCTTGTGGAACCCCAAATTATGTTGCTCCTGAGGTTCTTAATGATAAAGGTTATGATGGTTCAGCATCTGATATCTGGTCATGTGGGGTCATTCTCTTTGTTTTGATGGCTGGGTACTTGCCTTTTGATGAGCCAAATCATATGGCTTTGTATAAGAAAATTGGCAAGGCTGAATTTTCATGCCCATCATGGTTTCCACCAGAGGCAAAGAAACTGCTGAAGCATATTCTTGATCCAAACCCTCTAACGAGGATAAAAATTCCAGAACTTTTAGAAGATGAATGGTTCAAGAAAGGATACAAGCCAGCTTCTTTTGAAGAAGAAGAGGGTGTAAATATAGATGATGTAGCTGCTGCTTTCAATGATTCAAAGGAAAATCTTGTGACAGAAAGGAAAGAGAAACCCGTCTCCATGAATGCTTTTGAGCTCATTTCTAGATCACAGAGTTTCAATCTTGACAGTTTGTTTGAGAAGCAAATGGGTCTTGTGAAGCGAGAAACCCGTTTTACTTCTCAGCGCCCTGCAAACGAAATCGTGTCTAAAATTGAGGAAGCTGCCAAGCCTCTGGGCTTTAATGTTCACAAGCGAAACTATAAGATGAAGCTCCAAGGTGACAAGAGCGGAAGGAAGGGCCACCTTTCCGTGGCTACTGAGGTTTTTGAAGTGGCTCCCTCCTTGCACATGGTGGAGCTGCGGAAGACAGGGGGTGACACACTGGAGTTTCACAAGTTCTACAAAAACTTTTCATCAGGTTTGCAAGACGTAAATCAAGGTGCTAGTGCTATGCGCTTATTGTGGTTCACAGAAGGCATGGGTGCCTAG 1803 0.4293 MLAQESLKALGGLGLLSLGGKYILRRVFEDIAVVPLLVILPILESQAVSKLVQIKSCEDARQSIRRARQKVTVPVYGLANIFGLLVAFWGNSDKSETPLPSFRGVGLGVTIFHFAKSDILAEARTSFQLHNNYPHNNPLERSERSSLIESWKAKMSSMKAQKARTRVGKYELGKTIGEGSFAKVKFARNVETGESVAIKILDRNHVLRHKMMEQLKREISTMKLIKHPNVVKIFEVMASKTKIYIVLELVGGGELFDKVANNGRLKEDEARQYFQQLINAVDYCHSRGVFHRDLKPENLLLDSNGVLKVSDFGLSTYSQQDDALLRTACGTPNYVAPEVLNDKGYDGSASDIWSCGVILFVLMAGYLPFDEPNHMALYKKIGKAEFSCPSWFPPEAKKLLKHILDPNPLTRIKIPELLEDEWFKKGYKPASFEEEEGVNIDDVAAAFNDSKENLVTERKEKPVSMNAFELISRSQSFNLDSLFEKQMGLVKRETRFTSQRPANEIVSKIEEAAKPLGFNVHKRNYKMKLQGDKSGRKGHLSVATEVFEVAPSLHMVELRKTGGDTLEFHKFYKNFSSGLQDVNQGASAMRLLWFTEGMGA 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0682 600 CDD STKc_SnRK3 169 422 - -
Glsi07g0682 600 Gene3D Kinase associated domain 1, KA1 459 583 - -
Glsi07g0682 600 CDD CIPK_C 466 579 - -
Glsi07g0682 600 Gene3D Transferase(Phosphotransferase) domain 1 250 449 - -
Glsi07g0682 600 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 158 570 - -
Glsi07g0682 600 Pfam Protein kinase domain 170 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi07g0682 600 Gene3D Phosphorylase Kinase; domain 1 158 249 - -
Glsi07g0682 600 Pfam NAF domain 462 522 IPR004041 GO:0007165
Glsi07g0682 600 ProSiteProfiles NAF domain profile. 460 484 IPR018451 GO:0007165
Glsi07g0682 600 SUPERFAMILY Protein kinase-like (PK-like) 167 449 IPR011009 -
Glsi07g0682 600 ProSiteProfiles Protein kinase domain profile. 170 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi07g0682 600 FunFam Non-specific serine/threonine protein kinase 163 463 - -
Glsi07g0682 600 FunFam Non-specific serine/threonine protein kinase 459 584 - -
Glsi07g0682 600 FunFam Non-specific serine/threonine protein kinase 161 249 - -
Glsi07g0682 600 ProSitePatterns Serine/Threonine protein kinases active-site signature. 289 301 IPR008271 GO:0004672|GO:0006468
Glsi07g0682 600 ProSitePatterns Protein kinases ATP-binding region signature. 176 199 IPR017441 GO:0005524
Glsi07g0682 600 SMART serkin_6 170 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0682 Glsi-ChrGlsi07 5965397 5977472 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0682 163 588 CBL-interacting serine-threonine protein kinases AT1G01140 77.471 0.0 698
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Glsi07g0682 Pkinase 2.4e-72 CL0016