Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0659 ATGGCAGCTAAGAATCTCTGCTTCACTACATTCTCTTCTATCTCAGCCCAGAAAAACAAACCCCAAATTGCAGCTTCGACGAAACGATTCGTTTCATGCTCGCCGTCTTTGCCTTCTTCGGTTCATTCGTTATGCCTGGGCGCTATATTCTCTCCGCAGCCTTGCACTTCGAACCTTTCGTCGTCTTCGGGGCAAAGCAGGAAAGATAGGGTTTGCACGACTTTGGCGGTGGTGGAAGAAGAAGCAGTGGTTGCAGAAGGGATTAATGGAGAAGCATATGTGGACCCAGTAAAAGATGGCGTTTCCAGCGAGGAGGAACCCAAGAAACTGGGAAGACCGTGTGAAGTATATGTGTGTAACCTCCCAAGAAGTTGTGACTCAACACAGCTTCAGGATATGTTCAAGCCTTACGGAACTGTTCTATCAGCAGAGGTATGTAGGAATGCTGAGACTGGTGAAAGTAGAGGATGTGGTTACGTTACAATGCAATCTATAAACTCAGCAAAAAAGGCAGTTGCTGCATTGGATGGATCAGATGTTGGTGGGCGCGAAATGCGGGTTAGATTTTCAGTTGAGATGAATTCAGGAAGGAAGAATCCTGAGACAATGAACTCGTCACCCCAGAAAGTTATATACTATGAAACTCCTTATAAGTTGTATGTTGGCAATCTTGCTAGGGCTGTTAAACCAGAAGAGTTATGGAATCGTTTTAGCAGATATGGGACGGTGGTTAGTGTAAGATTGTTGCATGATCACAAAGAAGGGAACAGCCGTATTTATGGGTTTCTCTCCTTTCTTTCAGAGGCAGAGCGCGATGCAGCAATGTCCCTTAATGGAACAGAGCTTCGCGGCCGTACACTAGTAGTTAGAGAAGGTGTAGAGAAGACTGAGCCCTAA 897 0.4571 MAAKNLCFTTFSSISAQKNKPQIAASTKRFVSCSPSLPSSVHSLCLGAIFSPQPCTSNLSSSSGQSRKDRVCTTLAVVEEEAVVAEGINGEAYVDPVKDGVSSEEEPKKLGRPCEVYVCNLPRSCDSTQLQDMFKPYGTVLSAEVCRNAETGESRGCGYVTMQSINSAKKAVAALDGSDVGGREMRVRFSVEMNSGRKNPETMNSSPQKVIYYETPYKLYVGNLARAVKPEELWNRFSRYGTVVSVRLLHDHKEGNSRIYGFLSFLSEAERDAAMSLNGTELRGRTLVVREGVEKTEP 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0659 298 PANTHER OS02G0815200 PROTEIN 51 290 - -
Glsi07g0659 298 SMART rrm1_1 115 188 IPR000504 GO:0003723
Glsi07g0659 298 SMART rrm1_1 218 290 IPR000504 GO:0003723
Glsi07g0659 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 192 IPR000504 GO:0003723
Glsi07g0659 298 Gene3D - 60 196 IPR012677 -
Glsi07g0659 298 Gene3D - 197 298 IPR012677 -
Glsi07g0659 298 SUPERFAMILY RNA-binding domain, RBD 213 295 IPR035979 GO:0003676
Glsi07g0659 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 186 IPR000504 GO:0003723
Glsi07g0659 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 219 287 IPR000504 GO:0003723
Glsi07g0659 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 217 294 IPR000504 GO:0003723
Glsi07g0659 298 SUPERFAMILY RNA-binding domain, RBD 111 200 IPR035979 GO:0003676
Glsi07g0659 298 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 60 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0659 Glsi-ChrGlsi07 5807244 5808698 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0659 114 297 Eukaryotic Initiation Factors Gene Family AT2G23350 32.275 9.19e-17 78.6