Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0654 ATGCCAAATCTATGTATATGTTACGTTATCTTGTCTTCTATCTTTGCCAAATCAATTACTCTGTCTTTTGAAACTTCATTTGCTGCATCTGACACTAGTCTGCCTTTCACATACATGCTAAGAAGTATCAACAGTGACACATATATGAGACACGGCAAAAGTATAAATGCTGACCTCTACTGTATACGGCTTAGTGCTGTCATTCTCTGTTGTATAAAACTTGAGAAATTGAAGTCCAGAGATTTCTCGGGCTGTAAAAATAATACTTGGATCCCTCCCTGCTCAGCTCTGATGGAGAGGCTTCAAGGACCCATCAATTCCTGTTTCTTTGGTGAGCATTTGGAAGTAAATTGCTTAGAGCAAGGTTTCATCAATACGGAGAGCGCCTTGAGCCTTGAGGAGGAAGAGGAACAATTTTTTATATCAAGCTTTGAGGATAAGATGCCATTTCTGCAGATGCTTCAGAGTGTGGAATCCCCACAGTTTTTTCCCTTCAAAGAGGCAAACTTTCAAACACTTCTAAGACTACAGCACCTGAAGAAACCATGGGAAGGGAAAGCCTACATACCCAGATTGGAGACCCAGATTCAAGCGCTAGAACTTGAGAGCTGCGTCACCCATGACCTGATGGTGGAGATGCAGTCACCTGTGAAATCAGAAAGCAACGACCTTCATCTTCCACCTTCAGCTCTCTTTGTTGAGAAAGTGGGTTTAGAACGACCCAACTCAGCTGCAAATTGTAGCAAAGAAGCCAACTCACAATCATGGCCTGAAGAGACCCAGAACCTCAAATCTCAGCTAGCTACGACCAGAGAACGGAGAAAGCGAAAGAGAACAAGACCAACCAAGAATAAGGAAGACGTGGAGAATCAGCGCATGACGCACATTGCCCTCGAACGCAACCGGCGACGCCAAATGAACGACCATCTCAGTGTTCTAAGATCCCTCATGCCATCTTCCTATATTCAAAGGGGTGACCAAGCATCTATCATAGGAGGTGCAATAGACTATGTGAAGGAATTGGAGCAGCTACTTCAATCCCTGGAGGCAGAAAAAAGGGTTAGAAAAAACGGAGGGGTTGGTGGTTCCAGTGAGAGGTTTAAAGCAGTGAGGTCTGCCATGGAAGAAGCAGACTGTGGAGAAGAGGTGAAGGCAGGTAACAAGTCAGAGGCAGCGGAGATAGAGGTGACAGTGATTCAAAGCCATGTGAACTTGAAAATTCAGTGCCAAAGGACACCTGGACAATTGATAAAAGCCATTGTTGCTTTGGAGGATCTTAGGCTCAGCATTCTGCACCTCAACATCACCTCCTCACAGTCTTCAGTACTCTACTCTTTCAATCTCAAGATAGAAGAAGACTGTAAGCTAGGATCAGCAAATGAAATTGCAGCAGCAGTGAATCAAATATTCAGCTTCATTAATGGTAGCTAG 1431 0.4416 MPNLCICYVILSSIFAKSITLSFETSFAASDTSLPFTYMLRSINSDTYMRHGKSINADLYCIRLSAVILCCIKLEKLKSRDFSGCKNNTWIPPCSALMERLQGPINSCFFGEHLEVNCLEQGFINTESALSLEEEEEQFFISSFEDKMPFLQMLQSVESPQFFPFKEANFQTLLRLQHLKKPWEGKAYIPRLETQIQALELESCVTHDLMVEMQSPVKSESNDLHLPPSALFVEKVGLERPNSAANCSKEANSQSWPEETQNLKSQLATTRERRKRKRTRPTKNKEDVENQRMTHIALERNRRRQMNDHLSVLRSLMPSSYIQRGDQASIIGGAIDYVKELEQLLQSLEAEKRVRKNGGVGGSSERFKAVRSAMEEADCGEEVKAGNKSEAAEIEVTVIQSHVNLKIQCQRTPGQLIKAIVALEDLRLSILHLNITSSQSSVLYSFNLKIEEDCKLGSANEIAAAVNQIFSFINGS 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0654 476 PANTHER MAX DIMERIZATION, MAD 239 473 - -
Glsi07g0654 476 Gene3D - 281 357 IPR036638 GO:0046983
Glsi07g0654 476 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 290 341 IPR011598 GO:0046983
Glsi07g0654 476 MobiDBLite consensus disorder prediction 245 267 - -
Glsi07g0654 476 Coils Coil 331 358 - -
Glsi07g0654 476 Pfam Helix-loop-helix DNA-binding domain 291 342 IPR011598 GO:0046983
Glsi07g0654 476 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 290 355 IPR036638 GO:0046983
Glsi07g0654 476 CDD bHLH_AtFAMA_like 293 356 - -
Glsi07g0654 476 MobiDBLite consensus disorder prediction 243 289 - -
Glsi07g0654 476 SMART finulus 296 347 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0654 Glsi-ChrGlsi07 5775934 5782383 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0654 132 475 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G01460 43.380 4.91e-74 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi07g0654 HLH 4e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi07g0654 07 5775934 5782383 Glsi07g0654 07 5775934 5782383 ECH