Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0643 ATGGCAATGTCTAGTTCATCAGAAACCCATTCCAAACTCAATAGTTTCGAAGGAGAACAAGTAGCTCAACAAAACAGAGACCTTGATGATCATCAAGAAGAATGCTTTTCCTATGCTATGCAGTTGGTGAATTCTGTTGTGCTTCCCATGGCCTTGCAAACTGCTATTGAGCTCAAGGTGTTTGATGTAATGTCCAAGTCAGGTCCGGGCGCAAAACTCTCAGCCGGGGAAATTGCGACCCGGGTTTCCAGCAAGAACCCGGAAGCACCCACGATGCTTGATCGGATCCTCAGGCTCCTGGCTAGTCACTCTGTGATTCATTGTTCAGTTGTTGTTGATCCTGAAGGGGTTGGCTCTTTTCAGAGGCTTTACGGTTTGAACCCAGTGTCTAGATATTTTGTGGCTAATGATGATGGGGTTTCACTGGGACCTCTCATGGCCTTGATTCAAGACAAGGTCTTCTTACAAAGCTGGGCCCAGCTGAAAGATGCAATTTCGGAAGGTGGTGTTGCATTCAATAGGGTTCATGGCTCACATGCGTTTGAGTATCCGAGCTTGGACTCAAGGTTCAATGAGGCTTTTAACAAGGCAATGGTGAATCATACCACTTTAGTTGTGAAGAAGATTCTTGAATCCTACAAGGGTTTTGACGACATCAAAAGGCTTGTGGATGTGGGTGGTGGTCTTGGGATTACTCTTAACTTGATCACTTCGAAATACCCTCATATTCAGGGTATCAATTTCGACTTGCCTCATGTCATAGAACATGCTCCTTCCTATCCTGGAGTGGAACACGTGGGAGGAGATATGTTTGAAAGTGTGCCTAAAGGAGATGCCATCTTTATGAAGTGGATCCTCCATGATTGGAGCGATGAAAGGTGCTTGAAGCTGTTGAAGAACTGCTATAATGCTATTCCTGATGATGGAAAGGTGATTGTTGTGGAGGCAGTTCTTCCCATTATACCAGAGGCTAGTGCTGCTGTGAAAAGCACCTCCCAACTTGATGTTCTTATGATGACTCAAAACCCAGGAGGTAAAGAGAGAAGTGAACAAGAATTCATGGAACTTGCAACAGAAGCTGGATTTGGTGGTATTAGATATGAATGCTTTGTTCGTAATTTCTGGGTTATGGAGTTCTTCAAGTAG 1146 0.445 MAMSSSSETHSKLNSFEGEQVAQQNRDLDDHQEECFSYAMQLVNSVVLPMALQTAIELKVFDVMSKSGPGAKLSAGEIATRVSSKNPEAPTMLDRILRLLASHSVIHCSVVVDPEGVGSFQRLYGLNPVSRYFVANDDGVSLGPLMALIQDKVFLQSWAQLKDAISEGGVAFNRVHGSHAFEYPSLDSRFNEAFNKAMVNHTTLVVKKILESYKGFDDIKRLVDVGGGLGITLNLITSKYPHIQGINFDLPHVIEHAPSYPGVEHVGGDMFESVPKGDAIFMKWILHDWSDERCLKLLKNCYNAIPDDGKVIVVEAVLPIIPEASAAVKSTSQLDVLMMTQNPGGKERSEQEFMELATEAGFGGIRYECFVRNFWVMEFFK 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0643 381 Gene3D Vaccinia Virus protein VP39 134 381 IPR029063 -
Glsi07g0643 381 MobiDBLite consensus disorder prediction 1 22 - -
Glsi07g0643 381 MobiDBLite consensus disorder prediction 1 27 - -
Glsi07g0643 381 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 40 381 IPR016461 GO:0008168
Glsi07g0643 381 FunFam Caffeic acid O-methyltransferase 134 381 - -
Glsi07g0643 381 FunFam Caffeic acid 3-O-methyltransferase 17 133 - -
Glsi07g0643 381 SUPERFAMILY "Winged helix" DNA-binding domain 30 136 IPR036390 -
Glsi07g0643 381 CDD AdoMet_MTases 221 314 - -
Glsi07g0643 381 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 138 379 IPR029063 -
Glsi07g0643 381 Gene3D - 17 133 IPR036388 -
Glsi07g0643 381 PIRSF O-mtase 17 381 IPR016461 GO:0008168
Glsi07g0643 381 PANTHER O-METHYLTRANSFERASE 39 366 IPR016461 GO:0008168
Glsi07g0643 381 Pfam Dimerisation domain 50 101 IPR012967 GO:0046983
Glsi07g0643 381 Pfam O-methyltransferase domain 158 362 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0643 Glsi-ChrGlsi07 5661182 5708440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0643 33 381 Monolignol Biosynthesis Gene Families AT5G54160 55.143 1.58e-145 415