LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi07g0639	ATGGATATCGGAGGCCCCAACCAGCCCCGCTTGATCGGAGATTACATTCTGGGACCAAAAATTGGGTCGGGCTCTTTTGCAGTGGTGTGGCGCTCGAGGCATCGTCACTCGGGTTTGGAGGTTGCTGTTAAAGAGATTGAAAAGAAACGGCTTAGCCCGAAAGTCCGTGAGAATCTGCTCAAAGAGATCTCTATTCTCAGTACCATCAATCACCCAAACATAATTCGACTATTCGAAGCAATCCAGACCAATGATAGGATTTACCTTGTTTTGGAGTATTGTGGTGGTGGTGACCTTGCTGCTTACATTAATCGGCGTGGAAAAGTTTCAGAATCCATTGCTCGGTATTTCATGACGCAACTAGCTGCGGGGTTGCAAGTACTTCAAGAAAAGCACCTCATTCACAGAGATTTAAAGCCGCAGAACTTACTATTGTCTACTGAAGCTACGCCACTCCTGAAAATAGGGGATTTTGGTTTTGCAAGGTCACTCACACCCCAAGGGTTGGCGGACACACTGTGTGGTTCCCCATTGTACATGGCTCCAGAGATAATTCAAAATCAGAAGTATGATGCCAAGGCTGATTTATGGAGTGTTGGGGCAATATTGTTCCAGCTGGTGACTGGGAGGCCACCATTTGATGGAAATAGTCAATTCCAGCTTTTTCAGAACATTTTGACATCCACTGAACTGCAGTTTCCACCAGAGGCTTTAAATGAGTTACATCCAGACTGCTTGGATCTTTGCAGAAGACTTCTACGCCAAAAACCAGTTGAGCGATTAACATTCAAGGAGTTCTTCAATCACAATTTCCTACAGAAGCCCAGGTCAATCATGAATGTCAAGCAGTCTTCATTACTTCCAGGGGAAACATTAATGGTTCAGCAATATAGTGTTTCTGCCTCTGAAAAGATGCCTCAGTGTCATACTGGATTTCATTTTGAGTCGTCTGTAGATGATCCACTGGTAATCAGTTCAGCTGTCAATGAGACAGTGCTGTTACAAAGAAAGGATAGCAGTAGTAATGCTGGCTCTAAGAGTGTTCAGGGGATAATTTCACCTATTGCATGTGATGATAAGAATAAGGGGAAGTCTGTAGATACTGGTGCTTATTTTTCTAACCAGCCTCAAGTTTCTCATTTAATGGAGTCCATTGAGAAAGATTATGTCATAGTCAATCCTCATTTTGCATCATTGGAGGCTTTCTCTGATTACTTTGAGGCATCCATCCAAGATAATTTCATAAGTAGGGTTTCTATCTGTCCTTCAAAGAGGGTTGACCTTGAAGTTGGAGTTGCAAAGCAGACAAAGGATCCAGCCTCTTGCTATACTGATGGAGTAGAAAAGTCAAAAAATGATGAATTTGAGGCATCCTCGGTGTTTTCTATTCTGAGAAAAGCACTAGGAGTATCCTCACTGCGCCCTTCAAATAGGTTAGAGTTGTTGCATCATTATGTGCAGATCCTCACAGAACTTTCACGAGAAAAATATAATGCAGGAATGTATCTGGAAGCATTTGCAGTTGAGTTGGTTGTTTTGGCTATATGGAAGAAAGCTCTAGAAGTTTGTGACTCTTGGCTGGCCTCCATCACTGAGAGTGAGTGGCCTGGAAGCACTTCAACCAAAGAATCCACATTTTACTGCAGAGATGTATGCATATCGCAGTCCATGGAACCGAAAATAGATTTTACCGACCCTTCATCTATGTCCTTGTGGGCCAATCAAGGGTTTATTTTTGCAGTTGATCATGCAGAGAAATTATCATGTCATATTCAAAATATGGATGGTGCCCCCGAGATGCCAGATGCAATGGAGATCATATTTAAAGAAGCACTATCAGTTGGAATAAGCGGTGCTTTAGACGAGTATATGGAGAACAGAGGTAGGGCAGCTGCAGCTTACTCAAAAGCGATGCTAATACTTTCATTTATTGTGGGAGAAGCAGTGCACCTTCCACTGAATCCACCATTTTCATTAACTCCTGCTAATAAGAAGCGAATCTTGCAGTATATTCTCAACCTGCAGTCTCATCAACTTCAGTCTTCGTCATCATCAGAGCCCTCTTCTAAGGCAAACCCATATTCTTTACCAAGTAAATAA	2100	0.4257	MDIGGPNQPRLIGDYILGPKIGSGSFAVVWRSRHRHSGLEVAVKEIEKKRLSPKVRENLLKEISILSTINHPNIIRLFEAIQTNDRIYLVLEYCGGGDLAAYINRRGKVSESIARYFMTQLAAGLQVLQEKHLIHRDLKPQNLLLSTEATPLLKIGDFGFARSLTPQGLADTLCGSPLYMAPEIIQNQKYDAKADLWSVGAILFQLVTGRPPFDGNSQFQLFQNILTSTELQFPPEALNELHPDCLDLCRRLLRQKPVERLTFKEFFNHNFLQKPRSIMNVKQSSLLPGETLMVQQYSVSASEKMPQCHTGFHFESSVDDPLVISSAVNETVLLQRKDSSSNAGSKSVQGIISPIACDDKNKGKSVDTGAYFSNQPQVSHLMESIEKDYVIVNPHFASLEAFSDYFEASIQDNFISRVSICPSKRVDLEVGVAKQTKDPASCYTDGVEKSKNDEFEASSVFSILRKALGVSSLRPSNRLELLHHYVQILTELSREKYNAGMYLEAFAVELVVLAIWKKALEVCDSWLASITESEWPGSTSTKESTFYCRDVCISQSMEPKIDFTDPSSMSLWANQGFIFAVDHAEKLSCHIQNMDGAPEMPDAMEIIFKEALSVGISGALDEYMENRGRAAAAYSKAMLILSFIVGEAVHLPLNPPFSLTPANKKRILQYILNLQSHQLQSSSSSEPSSKANPYSLPSK	699

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi07g0639	699	ProSitePatterns	Protein kinases ATP-binding region signature.	21	44	IPR017441	GO:0005524
	Glsi07g0639	699	MobiDBLite	consensus disorder prediction	679	699	-	-
	Glsi07g0639	699	SMART	serkin_6	15	272	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi07g0639	699	FunFam	Non-specific serine/threonine protein kinase	4	95	-	-
	Glsi07g0639	699	Gene3D	Transferase(Phosphotransferase) domain 1	7	343	-	-
	Glsi07g0639	699	ProSiteProfiles	Protein kinase domain profile.	15	272	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi07g0639	699	PANTHER	SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED	9	534	IPR045269	GO:0004674\|GO:0006914
	Glsi07g0639	699	FunFam	Serine/threonine-protein kinase ATG1	7	313	-	-
	Glsi07g0639	699	Pfam	Protein kinase domain	18	272	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi07g0639	699	CDD	STKc_ATG1_ULK_like	21	271	-	-
	Glsi07g0639	699	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	133	145	IPR008271	GO:0004672\|GO:0006468
	Glsi07g0639	699	SUPERFAMILY	Protein kinase-like (PK-like)	11	325	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi07g0639	Glsi-ChrGlsi07	5608871	5614822	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi07g0639	5	267	CBL-interacting serine-threonine protein kinases	AT2G30360	37.546	8.19e-53	187

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	Group-Pl-3	Glsi07g0639		Pkinase	5.2e-73	CL0016