Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0624 ATGGGTGGAAAGGTGGGGAACGTTAGGTTCAAGAGGCATGTTTTGAATGCTTCTTCTTCTCACTACCACACTCAGCTTAGAAAAGAAAGCGAAGCTCCTCATCTTCTTTCCTGCTTTACTGGCCATCTGGGTGCTCTTACTTTTCCTTCTAGTGAGATGGCTGAGGAACTGGACAAACCTTTGCTTGACCCTGAGAATTTCAACCGAGAGGGTATTGATTTGGAGCGCATACCATTAGGAGAAGTGTTTGAACAGCTAAGAACATCCGAGAGAGGACTTTCATCTGATGATGCTGAAGCTCGGCTGCAGATATTTGGACCAAACAAGCTTGAAGAGAAGACAGAGAATAAAATATTGAAGTTTCTCAGTTTTATGTGGAATCCTCTATCATGGGTTATGGAAGCAGCAGCTGTGATGGCAATTGTCCTTGCTAATGGCGGAGGGGAGGGTCCTGATTGGCAAGACTTTGTAGGGATTATATGCCTACTGGTGATAAACTCAACAATTAGTTTTATTGAAGAAAATAATGCTGGGAATGCAGCAGCAGCACTGATGGCTCGTTTAGCTCCTAAAACAAAGGTTCTGAGAGATGGCCAGTGGCAAGAGCAAGATGCAGCTATTTTAGTGCCTGGAGATATAATCAGCATAAAGCTGGGAGATATTATTCCAGCTGATGCTCGTCTTCTTGAAGGAGACCCACTAAAAATTGACCAGTCAGCCCTTACTGGAGAATCTCTGCCGGTCACCAAGAAGACAGGCGATGAAGTCTTTTCTGGCTCAACATGCAAGCATGGAGAGATTGAAGCTGTAGTGATAGCAACAGGGGTTCACTCCTTTTTTGGGAAGGCGGCACACTTAGTAGACAGTACTATAGTTGTTGGACATTTTCAGCAGGTCCTAACCTCAATTGGGAACTTCTGCATTTGCTCCATAGCTGTAGGGATGATTCTTGAAATCATTGTAATGTATCCTGTACAGCACCGTTCATATAGGAAGGGAATCAACAACCTTCTTGTTCTCTTAATTGGTGGAATACCCATAGCTATGCCGACAGTGTTATCTGTGACACTTGCAATTGGCTCTCATCGACTATCACAGCAGGGAGCCATCACAAAAAGAATGACAGCAATTGAAGAAATGGCAGGCATGGATGTCTTATGCAGTGACAAAACTGGAACTCTTACTCTGAATCGCCTCACTGTTGATCGAAACCTTGTAGAGGTCTTTAACAGCGATATGGACAAAGATATGATTGTCCTACTAGCAGCCAGAGCAGCTAGAGTGGAAAATCAAGATGCCATTGATGCTGCCATCATTAATATGCTAGCTGATCCAAAGGAGGCACGTACAAACATCACTGAAGTTCATTTTCTACCATTCAATCCAGTAGACAAACGCACTGCTATTACATATATTGATTCTGATGGAAACTGGTACAGGGCCAGCAAAGGAGCTCCTGAACAGATTCTAAATATGTGCCAAGAGAAAGACGAGATTGCCAGAAAAGTTCATGCAATCATTGACAAATTTGCTGAAAGGGGCTTGCGATCTCTTGCAGTTGCTTATCAGGAAGTTCCTGAAAAATCCAAGGATAGTCCTGGAGGTCCTTGGACTTTTTGTGGGTTGTTGCCCTTGTTTGATCCTCCAAGACATGATAGTGCTGAGACCATACGTAGAGCACTTGGTCTCGGAGTCTGCGTTAAGATGATTACAGGGGATCAGTTGGCAATTGCAAAAGAGACAGGCCGAAGACTTGGTATGGGGACAAATATGTACCCTTCTTCATCATTGTTTGGCCGTGAAAGAGATGAAAATGAACCTCTCCCAGTAGACGAGCTTATTGAAAAGGCAGATGGCTTTGCTGGTGTATTTCCTGAACACAAGTATGAAATTGTGAAAATTTTAAAAGAAAAGAAGCATGTGGTTGGAATGACCGGAGATGGTGTAAATGATGCACCAGCTTTAAAGAAAGCAGATATTGGAATTGCCGTATCAGATTCTACAGATGCTGCAAGAGGTGCTGCCGATCTTGTCTTAACTGAGCCTGGCTTGAGTGTGATTGTCAGTGCTGTGTTGACTAGCCGAGCTATATTTCAGAGAATGAAAAATTATACAATATATGCAGTCTCCATAACCATAAGGATAGTGCTAGGTTTTGTGCTTCTAGCATTGATTTGGGAGTATGATTTTCCACCTTTCATGGTCCTGATCATAGCAATACTGAATGACGGGACAATCATGACCATTTCTAAAGACCGAGTGAAGCCATCCCCGACACCTGACAGTTGGAAGCTTCCAGAGATATTTGCAACTGGAATAGTCATTGGCACTTATCTTGCTTTGGTTACTGTTCTGTTCTACTGGGCTGTAGTTAAGACCACCTTCTTTGAGACCCACTTCCATGTAAACTCCTTATCCAGCAACGATGAGAAAGTTTCATCTGCAATATATCTGCAAGTTAGCATCATTAGCCAGGCCTTGATCTTTGTAACACGTAGTCGAGGGTGGTCATTTCTAGAGAGACCTGGAGCTCTGTTGATGTGTGCCTTTGTTTTAGCTCAACTGGTGGCAACCTTAATAGCTGTCTATGCACATATCAGCTTTGCTTATATTAAAGGCATTGGATGGAAATGGGCTGGTATTATATGGTTATACAGTTTGGTCTTCTATGTACCTTTGGACATTATCAAGTTCGCAGTGCGCTATTTCTTGAGTGGAGAAGCCTGGAATCTGTTATTTGATAGAAAGACTGCTTTTACTACTAAGAAAGACTATGGGAAGGATGATAGAGAAGCAAAGTGGATTCTTTCTCAGAGAAGCCTACAAGGATTGATGACCACAGACTTGGAGGGGAACGGAAGGCGATCTTCTTTGATTGCAGAACAGGCCAGGCGACGTGCTGAAATAGCTAGGCTGGGAGAGCTACACACTCTGAGAGGACATGTAGAGTCCGTTGTGAGACTTAAAAACTTGGACCCCAAACTAATCCAATCAGCTCACACAGTCTAA 3009 0.4324 MGGKVGNVRFKRHVLNASSSHYHTQLRKESEAPHLLSCFTGHLGALTFPSSEMAEELDKPLLDPENFNREGIDLERIPLGEVFEQLRTSERGLSSDDAEARLQIFGPNKLEEKTENKILKFLSFMWNPLSWVMEAAAVMAIVLANGGGEGPDWQDFVGIICLLVINSTISFIEENNAGNAAAALMARLAPKTKVLRDGQWQEQDAAILVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKKTGDEVFSGSTCKHGEIEAVVIATGVHSFFGKAAHLVDSTIVVGHFQQVLTSIGNFCICSIAVGMILEIIVMYPVQHRSYRKGINNLLVLLIGGIPIAMPTVLSVTLAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNRLTVDRNLVEVFNSDMDKDMIVLLAARAARVENQDAIDAAIINMLADPKEARTNITEVHFLPFNPVDKRTAITYIDSDGNWYRASKGAPEQILNMCQEKDEIARKVHAIIDKFAERGLRSLAVAYQEVPEKSKDSPGGPWTFCGLLPLFDPPRHDSAETIRRALGLGVCVKMITGDQLAIAKETGRRLGMGTNMYPSSSLFGRERDENEPLPVDELIEKADGFAGVFPEHKYEIVKILKEKKHVVGMTGDGVNDAPALKKADIGIAVSDSTDAARGAADLVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFVLLALIWEYDFPPFMVLIIAILNDGTIMTISKDRVKPSPTPDSWKLPEIFATGIVIGTYLALVTVLFYWAVVKTTFFETHFHVNSLSSNDEKVSSAIYLQVSIISQALIFVTRSRGWSFLERPGALLMCAFVLAQLVATLIAVYAHISFAYIKGIGWKWAGIIWLYSLVFYVPLDIIKFAVRYFLSGEAWNLLFDRKTAFTTKKDYGKDDREAKWILSQRSLQGLMTTDLEGNGRRSSLIAEQARRRAEIARLGELHTLRGHVESVVRLKNLDPKLIQSAHTV 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0624 1002 Pfam Cation transporter/ATPase, N-terminus 77 139 IPR004014 -
Glsi07g0624 1002 SMART Cation_ATPase_N_a_2 73 145 IPR004014 -
Glsi07g0624 1002 PRINTS P-type cation-transporting ATPase superfamily signature 387 401 - -
Glsi07g0624 1002 PRINTS P-type cation-transporting ATPase superfamily signature 645 664 - -
Glsi07g0624 1002 PRINTS P-type cation-transporting ATPase superfamily signature 237 251 - -
Glsi07g0624 1002 PRINTS P-type cation-transporting ATPase superfamily signature 541 552 - -
Glsi07g0624 1002 PRINTS P-type cation-transporting ATPase superfamily signature 563 573 - -
Glsi07g0624 1002 PRINTS P-type cation-transporting ATPase superfamily signature 668 680 - -
Glsi07g0624 1002 FunFam Plasma membrane ATPase 539 693 - -
Glsi07g0624 1002 SUPERFAMILY Calcium ATPase, transmembrane domain M 73 905 IPR023298 -
Glsi07g0624 1002 CDD P-type_ATPase_H 92 898 IPR006534 GO:0008553|GO:0016020|GO:0120029
Glsi07g0624 1002 Gene3D - 152 872 - -
Glsi07g0624 1002 SFLD C1.7: P-type atpase like 369 697 - -
Glsi07g0624 1002 FunFam ATPase 4 plasma membrane-type 639 872 - -
Glsi07g0624 1002 SUPERFAMILY Calcium ATPase, transduction domain A 190 287 IPR008250 -
Glsi07g0624 1002 Pfam E1-E2 ATPase 188 366 - -
Glsi07g0624 1002 Gene3D - 384 682 IPR023214 -
Glsi07g0624 1002 ProSitePatterns E1-E2 ATPases phosphorylation site. 389 395 IPR018303 -
Glsi07g0624 1002 FunFam Plasma membrane ATPase 190 274 - -
Glsi07g0624 1002 SFLD p-type atpase 369 697 IPR044492 -
Glsi07g0624 1002 SUPERFAMILY HAD-like 383 692 IPR036412 -
Glsi07g0624 1002 PRINTS H+-transporting ATPase (proton pump) signature 617 633 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi07g0624 1002 PRINTS H+-transporting ATPase (proton pump) signature 503 521 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi07g0624 1002 PRINTS H+-transporting ATPase (proton pump) signature 645 661 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi07g0624 1002 PRINTS H+-transporting ATPase (proton pump) signature 817 838 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi07g0624 1002 PRINTS H+-transporting ATPase (proton pump) signature 676 701 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi07g0624 1002 Gene3D - 954 1002 - -
Glsi07g0624 1002 PANTHER CALCIUM-TRANSPORTING ATPASE 75 939 - -
Glsi07g0624 1002 NCBIfam plasma-membrane proton-efflux P-type ATPase 92 863 IPR006534 GO:0008553|GO:0016020|GO:0120029
Glsi07g0624 1002 Gene3D - 190 274 - -
Glsi07g0624 1002 FunFam Plasma membrane ATPase 399 546 - -
Glsi07g0624 1002 Pfam haloacid dehalogenase-like hydrolase 383 659 - -
Glsi07g0624 1002 Gene3D - 399 546 IPR023299 GO:0000166
Glsi07g0624 1002 NCBIfam HAD-IC family P-type ATPase 620 730 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi07g0624 1002 NCBIfam HAD-IC family P-type ATPase 159 423 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0624 Glsi-ChrGlsi07 5491878 5503060 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0624 53 1002 Primary Pumps ATPases AT1G17260 80.842 0.0 1555