Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0619 ATGGGTGACCCGTCAGGATCAAATGACCAAATGGGCGACTCCCCGGCCCTTGCAGTAACCGGCAAGATCATGGTGGTAGCTATAATGATCCTATTCTTCGTGGTTGTGTTCGTCTGCTTCCTCCATCTCTACTCTAGATGGTTCTGGTGGCGACTTGAAGGAAGCACCACTCCCCAACTTCACAGCCGCCGTCGCCGTCGCCGGCGTTTCGTTTTTGCCCCCGGACAAGACCCGGCTAGTAACGGTGCTCAGCGAAGTGGACTCGACCCAGCAGTTCTTAGATCCTTACCCGTATTGGTATACCAACCAGAGAACTTCAAAGACGATCTGGAATGTGCAGTTTGCCTCTCTGAGCTTGTTCAAGGGGAAAAGGCCAGGATTTTACCCAAATGCAATCATGGGTTTCACGTAGATTGCATAGATATGTGGTTCCAGTCCCATTCTACCTGTCCACTTTGCAGAAACCCAGTTGCTTCTGAATCCTCTAATTCCAGTTGTAGCTCAGGTGCTGCGGAAAATGCCTCTGAGAATAGTCAGTCATCAGAAGCAGAAAATTCTGATGCTACGAGTGGCTTAGACTTAGAGTCTCCAAATTTTCCCACTAATGTGTTAGTTTGGGGGAACCAAACTCAAGTGAGTTCTGTTGGTACTTCTTTGGACGAAGGTCCTTCTCAGCCACCCTGCTCTTCATCTTCTTCATCAGCTGGTGGCATTTGTAGTAGTACTAATAATAGACGTCAAGGAATGTTGGTGATTGATATACCAAGTGAGAGAAATCTATCGTCTCTATCGCCTTCTGCAAGCAGGTTTGCTGAAGATGACCTGAAGTCACCAATGACATCGAGGTTGAAGTCATTCAAGAGGCTTTTAAGCAAAAGGTTGAATCCTTGTAGTCCCAGTTCTGTAGATGTGGAACAAGCAGGGAGAGGACAGGGCTAG 939 0.4782 MGDPSGSNDQMGDSPALAVTGKIMVVAIMILFFVVVFVCFLHLYSRWFWWRLEGSTTPQLHSRRRRRRRFVFAPGQDPASNGAQRSGLDPAVLRSLPVLVYQPENFKDDLECAVCLSELVQGEKARILPKCNHGFHVDCIDMWFQSHSTCPLCRNPVASESSNSSCSSGAAENASENSQSSEAENSDATSGLDLESPNFPTNVLVWGNQTQVSSVGTSLDEGPSQPPCSSSSSSAGGICSSTNNRRQGMLVIDIPSERNLSSLSPSASRFAEDDLKSPMTSRLKSFKRLLSKRLNPCSPSSVDVEQAGRGQG 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0619 312 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Glsi07g0619 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 160 IPR013083 -
Glsi07g0619 312 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 23 242 - -
Glsi07g0619 312 MobiDBLite consensus disorder prediction 164 194 - -
Glsi07g0619 312 SUPERFAMILY RING/U-box 92 159 - -
Glsi07g0619 312 CDD RING-H2_EL5-like 111 154 - -
Glsi07g0619 312 SMART ring_2 112 153 IPR001841 -
Glsi07g0619 312 Pfam Ring finger domain 111 154 IPR001841 -
Glsi07g0619 312 FunFam RING-H2 finger protein ATL3 79 159 - -
Glsi07g0619 312 MobiDBLite consensus disorder prediction 214 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0619 Glsi-ChrGlsi07 5449890 5450828 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0619 21 293 C3H Transcription Factor Family AT1G53820 43.729 6.55e-66 207
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi07g0619 07 5449890 5450828 Glsi07g0619 07 5449890 5450828 ECH