Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0612 ATGGATTCTATCAAGTCCTTCAAGGGCTACGGTAAGGTAGATGAGCTCGAGCAGCAAGCTTTCCAGAAGAAGACACGTAAGCGTCTCATCATCCTCGTCGTCTCCTGCCTCGTACTAGCTGCGGTGATCATTGCCGCAGTTTTAGGAGTTGTGATACACAAGCGTAACAGCTCGTCATCGTCGGATGACTCGGTTCCCCCGACTGAGATAACTCCGGCCGCGTCAGTTAAAGCCGTGTGCGACGTGACTCAGTACCCCAACTCTTGCTTCTCCAGCATCTCTTCCCTCCCCAACTCCAACACCACCGACCCGAAAATTCTCTTCAAGCTCTCTCTTCGCGTCGCCGTTGACGAGCTCTCGAAGCTCTCGAAGTTCCCTTCGAAGCTCAAAGCCAATGTTAAGGATCCGAGGGTACAGAAGGCCGTTGATGTCTGCGGAACCGTGTTCGATGACGCGGTGGATCGACTCAACGAGTCGATTTCGTCTCTGGAAGTCGGGGGCGGCGGCGGAAATGTCCTATCGCCGGCGAAGATCAGCGACATTGAAACGTGGCTAAGCTCAACGATTACGTACCAAGACACCTGTTTGGACGCTCTTGAGGAGTTGAATTCCACTGCCGCAAGTGAGCTTCTTCAAGATTTGAAGATCGCCATGAAGAATTCCACCGAGTTCGCGAGTAATAGCTTGGCCATTGTCACGAAGATTCTCGGTCTCCTCTCCAACTTCAACAACCCGATCCATCGGAGGCTGCTCGGGTTCGCCGGGTCCGAATCGGGGTTCCCGGATTGGGTTGGCCCGGCGGAGCGGAGGCTGCTGCAGGGGACCAATAAAACGACGGCAGATGCGGTGGTGGCGAAGGACGGGAGCGGGCAGTATAAGACGATCAAGGAGGCATTGGCGACGGTGAAGAAGAATAGCGTGAAGAGATTTGTGATTTATGTGAAGGAAGGGACTTACGTGGAGAATATAGATTTGGACAAGCACACGTGGAATGTGATGATTTACGGCGATGGGAAGACGAAGACTATCATCTCCGGTAGCCGGAACTTCATGGACGGCACACCCACTTTTGAGACTGCTACTTTTGCTGTTAAGGGAAAGGGATTCATTGCCAAAGACATAGGGTTTCTAAACACCGCAGGTGCATCAAAGCACCAAGCCGTGGCACTCCGATCAGGCTCAGACCAATCTGTGTTCTTTAGGTGCTCTTTTGATGGCTACCAAGACACTCTATATGCTCATTCCAACCGACAGTTCTACTCAGAATGTGACATCACAGGAACCATAGACTTCATTTTTGGAAATGCAGCTGTAGTCTTCCAAAACTGCAACATCAAACCTAGGCAGCCCCTACCAAACCAGTTCAACACCATCACAGCTCAGGGCAAGAAGGACCCAAACCAGAACACTGGGATTATAATCCAGAAATCTGCAATCTCAGCACTGGATAGTCTAACAGCTCGAACATACCTTGGTAGGCCATGGAAAGAGTACTCCACCACCGTCATTATGCTATCTGATATAGGGTCATTCTTGAACCCAGTTGGGTGGATAGAATGGGTCCCAAATGTGGAGCCTGCAAACACCATTTTTTATGCTGAATATCAGAACTCAGGACCAGGATCGGACGTGGCTCAGAGGGTTAAGTGGGCTGGTTATAAGTCAACTCTATCGGAAGAGGAGGCAGTGAAGTTCACAGTTCAATCCTTTATCCAAGGTAATGATTGGTTGCCAGATACTGAAGTGGAGTTTCAGTCTACCTTATGA 1767 0.5042 MDSIKSFKGYGKVDELEQQAFQKKTRKRLIILVVSCLVLAAVIIAAVLGVVIHKRNSSSSSDDSVPPTEITPAASVKAVCDVTQYPNSCFSSISSLPNSNTTDPKILFKLSLRVAVDELSKLSKFPSKLKANVKDPRVQKAVDVCGTVFDDAVDRLNESISSLEVGGGGGNVLSPAKISDIETWLSSTITYQDTCLDALEELNSTAASELLQDLKIAMKNSTEFASNSLAIVTKILGLLSNFNNPIHRRLLGFAGSESGFPDWVGPAERRLLQGTNKTTADAVVAKDGSGQYKTIKEALATVKKNSVKRFVIYVKEGTYVENIDLDKHTWNVMIYGDGKTKTIISGSRNFMDGTPTFETATFAVKGKGFIAKDIGFLNTAGASKHQAVALRSGSDQSVFFRCSFDGYQDTLYAHSNRQFYSECDITGTIDFIFGNAAVVFQNCNIKPRQPLPNQFNTITAQGKKDPNQNTGIIIQKSAISALDSLTARTYLGRPWKEYSTTVIMLSDIGSFLNPVGWIEWVPNVEPANTIFYAEYQNSGPGSDVAQRVKWAGYKSTLSEEEAVKFTVQSFIQGNDWLPDTEVEFQSTL 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0612 588 ProSitePatterns Pectinesterase signature 1. 306 325 IPR018040 -
Glsi07g0612 588 NCBIfam pectinesterase inhibitor domain 68 235 IPR006501 GO:0004857
Glsi07g0612 588 Pfam Pectinesterase 281 574 IPR000070 GO:0030599|GO:0042545
Glsi07g0612 588 CDD PMEI-like_3 78 235 - -
Glsi07g0612 588 SMART PMEI_2 71 231 IPR006501 GO:0004857
Glsi07g0612 588 FunFam Pectinesterase 72 236 - -
Glsi07g0612 588 Gene3D - 275 588 IPR012334 -
Glsi07g0612 588 Pfam Plant invertase/pectin methylesterase inhibitor 75 231 IPR006501 GO:0004857
Glsi07g0612 588 ProSitePatterns Pectinesterase signature 2. 425 434 IPR033131 -
Glsi07g0612 588 FunFam Pectinesterase 275 588 - -
Glsi07g0612 588 PANTHER PECTINESTERASE 37 580 - -
Glsi07g0612 588 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 76 236 IPR035513 -
Glsi07g0612 588 Gene3D Invertase/pectin methylesterase inhibitor family protein 74 236 IPR035513 -
Glsi07g0612 588 SUPERFAMILY Pectin lyase-like 279 585 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0612 Glsi-ChrGlsi07 5406679 5410459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0612 1 582 Carbohydrate Esterase AT1G53840 59.831 0.0 688