Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0603 ATGATGTTTCATCCTCTGGGAGTTTCGAAACAAACTTGTAGTCTACTTGCTGTCACCTGTGGCAAAAGCTTTGAGCATGAATTTGAGAAGAAACTCCCACAAAATCAGCCCAAATATCCTTTTCCCGAGTTAGTTTCCTCAGGACGTCTGGAGGTTCAAACTCTAAACAATCCTGAAAAAGAACAGTTTCGAAAAGTTCTTGAGTCATATCAACCAAATTTTGTATATTTACAAGGAGAACAGCTTGCGAATGGTGAAGTTGGTTCACTGGTTTGGCAAGGGGAGGACTTGGCCACTTCTGAAGCTATGTCAGAGCTCTTTGGTCCCACATTGCCAACAGCTGTTTATCTGGAAATCCCTAATGGAGAAACTTTGGCTGAGGCTCTTCATCTCAAGGGAGTCGCATATGTGATTTATTGGAAGAATACTTTTTCTTGTTATGCTGCTTGTCATTTTCGTCAAGCATTTCTTTCGGTGGTGCAGAGTTCGTCTACGCATACATGGGATGCCTTTCACCTTGCACGTGCTTCTTTTGAGCTTTACTGTGTTGAAAACAATCAAGTCCTTCTTGCTGAGAATCATAATGCTCGTAGCAATATAGGGCCACACCTTCTTGGCAACTGTCTGAAAATCAATGTTGACCCTCCTGAGGTGTTTGAAGATGATGAAGAAAGTTCCTCAGGCAGTCTTCCTGCTATAAAGATACATGATGAAGAAGTCAACTTGAGATTTCTCGTCTGTGGTGCACCTTCCACTGTTGATGTGTCTATGCTGAGATCTTTGGAGGATGGACTCAAGGCTCTCTTAACTATTGAAATACGTGGGAGCAAACTCCATGGCAAGTTCAGTGCTCCCCCACCACCTCTTCAGGCAGCCACTTTTTCTCGTGGAGTTGTGACTATGCGATGTGATATATCAACCAGTAGTTCTGCCCATATCTCACTTCTTGTGTCTGGAAGTGCACAAACTTGCTTTAATGACCAGTTGTTGGAGAATCATATAAAAAATGAGATAATTGAGAAGAGCGAACTAGTTCATGCACAAATTAATGAGGGAAACAAACAGCATGTCTCTGAACCTCGGAGATCTGCCTCAATTGCTAGTGGAGCAGCAGTATTTGAAGTTTGCATCAAGCTTCCTCTATGGGCATTGCAGGTTTTGAGACAGCTAGCACCTGATGTTACTTATCGAAGCTTAGTTGCACTTGGGATTGCTAGCATTCAGGGGTTGCCGATTGCTTCGTTTGAGAAAGATGATGCTGAGCGTCTGCTTTTCTTTTATCAAAATTGTGAAAAAGATAGCTGTGTGAACAATATAATTTTCAGCAGTCCGCCTGCTTGGTTGAAACCACCCCCTCTTACCAGAAAAAGGTGTGAGCCAACCCAAGAGGCAAGCCCTGGCCTTCATGATGGTGTCATTGCTGGGCAAGGTACTGGTAGAAAAGTAGATGAAGAGGAAAAGGATACAAAAGTGGTGAATGGGATTGGCACACCCTTAACTCCAGCTAGGCAGAGATTAAAAGTATCTGCAATGAGGCCCATTCCTCATGTTCGCCGCCATAGAATGACACCTTTTTCTGGACCTTCTGAGACAGATGGTTTTGATGGTGCTCAAGTTGAGGCTAGTTTGCCTCTTGTTATCCCCACAAAGCGCAGTACTAATGGATCAACTTCTGCAACACAGAGAAGATCGTTTTCAGGCTCAGCTCAGTCAAAGCAGGTTATTTCCCTGAATCCATTGCCCTTGAAAAAACATGGTTGTGGCAGAGGCTCAATACAGTCATGCTCGGAGGAGGAATTTCTTAAAGATGTCATGGAGTTTCTAATTCTTAGGGGACACAATCGACTAATTCCTCAAGGAGGGCTTAGTGAGTTCCCAGATGCCATACTCAATGGGAAGCGCCTTGACCTCTACAACTTGTATAAAGAGGTGGTTACTAGGGGAGGATTTCATGTTGGCAATGGCATCAACTGGAAAGGACAAATCTTCTCAAAGATGCGCAATTATACAACCACCAATAGAATGACTGGTGTTGGAAATACACTCAAAAGGCATTATGAAACCTACCTTTTAGAATATGAATTAGCGCATGATGATGTGGATGGAGAGTGCTGCTTGTTATGTCACAGTAGCGCAGCCGGGGATTGGGTGAATTGTGGCATATGTGGTGAGTGGGCCCACTTCGGCTGTGACAGAAGGCAAGGTCTAGGCGCATTCAAGGATTATGCGAAAACAGATGGGCTAGAATATATATGCCCTCACTGTAGCGTTGCAAATTTCAAGAAGAAACCATCCAGTGTTGCTAATGGGTATTCTCAGGGGTCAGTGGCATCAAGACCCCTTTGA 2346 0.439 MMFHPLGVSKQTCSLLAVTCGKSFEHEFEKKLPQNQPKYPFPELVSSGRLEVQTLNNPEKEQFRKVLESYQPNFVYLQGEQLANGEVGSLVWQGEDLATSEAMSELFGPTLPTAVYLEIPNGETLAEALHLKGVAYVIYWKNTFSCYAACHFRQAFLSVVQSSSTHTWDAFHLARASFELYCVENNQVLLAENHNARSNIGPHLLGNCLKINVDPPEVFEDDEESSSGSLPAIKIHDEEVNLRFLVCGAPSTVDVSMLRSLEDGLKALLTIEIRGSKLHGKFSAPPPPLQAATFSRGVVTMRCDISTSSSAHISLLVSGSAQTCFNDQLLENHIKNEIIEKSELVHAQINEGNKQHVSEPRRSASIASGAAVFEVCIKLPLWALQVLRQLAPDVTYRSLVALGIASIQGLPIASFEKDDAERLLFFYQNCEKDSCVNNIIFSSPPAWLKPPPLTRKRCEPTQEASPGLHDGVIAGQGTGRKVDEEEKDTKVVNGIGTPLTPARQRLKVSAMRPIPHVRRHRMTPFSGPSETDGFDGAQVEASLPLVIPTKRSTNGSTSATQRRSFSGSAQSKQVISLNPLPLKKHGCGRGSIQSCSEEEFLKDVMEFLILRGHNRLIPQGGLSEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTTTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVANFKKKPSSVANGYSQGSVASRPL 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0603 781 Gene3D - 591 697 IPR036431 GO:0003677
Glsi07g0603 781 SMART bright_3 595 699 IPR001606 GO:0003677
Glsi07g0603 781 CDD PHD_ARID4_like 704 755 - -
Glsi07g0603 781 Pfam ARID/BRIGHT DNA binding domain 597 694 IPR001606 GO:0003677
Glsi07g0603 781 CDD ARID 596 694 - -
Glsi07g0603 781 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 7 778 IPR042293 -
Glsi07g0603 781 SUPERFAMILY FYVE/PHD zinc finger 697 762 IPR011011 -
Glsi07g0603 781 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 698 760 IPR013083 -
Glsi07g0603 781 SMART ARID_2 591 694 - -
Glsi07g0603 781 MobiDBLite consensus disorder prediction 457 485 - -
Glsi07g0603 781 MobiDBLite consensus disorder prediction 549 570 - -
Glsi07g0603 781 ProSiteProfiles ARID domain profile. 594 698 IPR001606 GO:0003677
Glsi07g0603 781 SUPERFAMILY ARID-like 595 709 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0603 Glsi-ChrGlsi07 5342626 5351292 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0603 2 770 ARID Transcription Factor Family AT3G43240 61.757 0.0 950
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Glsi07g0603 ARID 2.3e-14 CL0123