Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0601 ATGGCTTCTGATCCAAGAATTGCGAAGAAGTCAAGTATGGGGCGACAGAAGATTGAAATCAAGAAGGTGGAGCAAAGCAACAAGCGCCACGTCACCTTCTCAAAACGCAAGCTTGGGCTTTTCCGGAAAGCCACCGAGCTATCCATTCTATGCCAAGCCGAAATCGCCGTCATCGTCTTCTCTCAGAGCGGCAGACTCTACGCTTCCGGCCACCCTGACCCGGATTCCGTAATCTACCGCTATCTCTCGGGCGGCTCCTCCTCCTCGACTTTGAACCCAACTGAACAGAACCCGGAAGCCGCCACGCTGAGCCAGCAATACGAGGAGGCTGTGAACCAGTTGGAAGCAGAGAAACAATGCCTGAAGATGATGACGGAGATTCAGGCGGCTGGTTGCGGACACGGGTTTTGGTGGGATCAGGGAATTGAGGATATGGGTTTGGAGGAGATTGAGCAGTTCAAGGAGTGCCTGGAAGAATTGAAGCAAAATCTGGTTGCTGCAGCAGAGGAGAAGGAGAAGGAGAAGGCGAGGTTGATGAAGAGTTCAATGCCGGAGACGCCACCAGAATTTTCGTACCTTTCTCTTTTGAATGGCGATGGGAGTGAGGATCAAGCATTGGATTATTGGATGGGTACTGACAGTGGTAGTTCCATGGCTCCTTATCTTGGCCATTGTGATTAA 681 0.514 MASDPRIAKKSSMGRQKIEIKKVEQSNKRHVTFSKRKLGLFRKATELSILCQAEIAVIVFSQSGRLYASGHPDPDSVIYRYLSGGSSSSTLNPTEQNPEAATLSQQYEEAVNQLEAEKQCLKMMTEIQAAGCGHGFWWDQGIEDMGLEEIEQFKECLEELKQNLVAAAEEKEKEKARLMKSSMPETPPEFSYLSLLNGDGSEDQALDYWMGTDSGSSMAPYLGHCD 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0601 226 SMART madsneu2 13 72 IPR002100 GO:0003677|GO:0046983
Glsi07g0601 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 68 IPR002100 GO:0003677|GO:0046983
Glsi07g0601 226 SUPERFAMILY SRF-like 13 84 IPR036879 GO:0003677|GO:0046983
Glsi07g0601 226 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Glsi07g0601 226 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Glsi07g0601 226 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Glsi07g0601 226 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Glsi07g0601 226 Gene3D - 26 120 IPR036879 GO:0003677|GO:0046983
Glsi07g0601 226 Coils Coil 147 181 - -
Glsi07g0601 226 Coils Coil 100 124 - -
Glsi07g0601 226 CDD MADS_MEF2_like 14 82 IPR033896 GO:0000977|GO:0045944
Glsi07g0601 226 PANTHER MADS BOX PROTEIN 15 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0601 Glsi-ChrGlsi07 5333102 5333782 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0601 10 220 Type I MADS-box Gene Family AT5G60440 32.719 1.11e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Glsi07g0601 SRF-TF 1.6e-21 No_clan